RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 BCL2L11O43521 198 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 SPRY1O43609 319 aaPredicted RBP13.45□□□□□ -0.26
UPF3B-202ENST00000345865 ADAP1O75689 374 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 APOC1P02654 83 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 CRHP06850 196 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 GLRA1P23415 457 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 GABRR1P24046 479 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 CBX5P45973 191 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 MTCP1P56278 107 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 TAS2R31P59538 309 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 ARPC4P59998 168 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 TUSC1Q2TAM9 212 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 CEACAM16Q2WEN9 425 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 ANKRD55Q3KP44 614 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 KRTAP27-1Q3LI81 207 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 RAB11FIP2Q7L804 512 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 SULF2Q8IWU5 870 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 PDZD9Q8IXQ8 264 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 CPT1CQ8TCG5 803 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 FIGNL2A6NMB9 653 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 C9orf172C9J069 976 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 SERPINA7P05543 415 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 CPT2P23786 658 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 FPR2P25090 351 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 GDF1P27539 372 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 CYB561P49447 251 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 GFRA1P56159 465 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 UBA52P62987 128 aaKnown RBP13.45□□□□□ -0.26
UPF3B-202ENST00000345865 OVCH2Q7RTZ1 564 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 BHLHE23Q8NDY6 225 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 Q96M66 194 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 S100A13Q99584 98 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 FOXB1Q99853 325 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 RNF126Q9BV68 326 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 EHFQ9NZC4 300 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 GPR160Q9UJ42 338 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 FAM230AA0A1W2PPH8 454 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 KANTRA0A1W2PQU2 76 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 DHRS7CA6NNS2 312 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 SERPINE3A8MV23 424 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 H0YIZ8 118 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 SFT2D2O95562 160 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 PLATP00750 562 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 LCATP04180 440 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 FGF2P09038 288 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 TMEM225BP0DP42 221 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 RPS2P15880 293 aaKnown RBP13.44□□□□□ -0.26
UPF3B-202ENST00000345865 M6PRP20645 277 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 ZP3P21754 424 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 RFC3P40938 356 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 OR3A2P47893 321 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 GLRX5Q86SX6 157 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 SLC38A6Q8IZM9 456 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 OR5AP2Q8NGF4 316 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 WNT5BQ9H1J7 359 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 ARRDC1-AS1Q9H2J1 176 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 CHMP1AQ9HD42 196 aaPredicted RBP13.44□□□□□ -0.26
UPF3B-202ENST00000345865 RASL12Q9NYN1 266 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 IGHV3-9P01782 118 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 PSMB6P28072 239 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 HTR5AP47898 357 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 FAM219AQ8IW50 185 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 SKA3Q8IX90 412 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 STPG2Q8N412 459 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 BVESQ8NE79 360 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 THAP6Q8TBB0 222 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF471Q9BX82 626 aaPredicted RBP13.44□□□□□ -0.26
UPF3B-202ENST00000345865 ZNF701Q9NV72 531 aaPredicted RBP13.44□□□□□ -0.26
UPF3B-202ENST00000345865 PFDN2Q9UHV9 154 aa13.44□□□□□ -0.26
UPF3B-202ENST00000345865 KNTC1P50748 2209 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 MPLP40238 635 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 SCRN3Q0VDG4 424 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 NKAPLQ5M9Q1 402 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 RRNAD1Q96FB5 475 aaKnown RBP13.43□□□□□ -0.26
UPF3B-202ENST00000345865 THOC3Q96J01 351 aaKnown RBP13.43□□□□□ -0.26
UPF3B-202ENST00000345865 PPA2Q9H2U2 334 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 BARX1Q9HBU1 254 aaPredicted RBP13.43□□□□□ -0.26
UPF3B-202ENST00000345865 GPR35Q9HC97 309 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 PLEKHJ1Q9NW61 149 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 FOXJ2Q9P0K8 574 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 CSAG2Q9Y5P2 127 aa13.43□□□□□ -0.26
UPF3B-202ENST00000345865 ARID1AO14497 2285 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 CELA3AP09093 270 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 TAS2R46P59540 309 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 TAF9Q16594 264 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 RPUSD3Q6P087 351 aaKnown RBP13.42□□□□□ -0.26
UPF3B-202ENST00000345865 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.42□□□□□ -0.26
UPF3B-202ENST00000345865 ZSCAN4Q8NAM6 433 aaPredicted RBP13.42□□□□□ -0.26
UPF3B-202ENST00000345865 GALNT11Q8NCW6 608 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 CCDC54Q8NEL0 328 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 NECAB3Q96P71 396 aaPredicted RBP13.42□□□□□ -0.26
UPF3B-202ENST00000345865 SIGLEC12Q96PQ1 595 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 TAAR9Q96RI9 348 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 CDC6Q99741 560 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 HES7Q9BYE0 225 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 NMES1Q9C002 83 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 OR2H1Q9GZK4 316 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 SLC25A32Q9H2D1 315 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 LRFN1Q9P244 771 aa13.42□□□□□ -0.26
UPF3B-202ENST00000345865 MED13Q9UHV7 2174 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms