RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZDHHC23Q8IYP9 409 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 C17orf78Q8N4C9 275 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 DEDD2Q8WXF8 326 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 SNRNP40Q96DI7 357 aaKnown RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 CCDC120Q96HB5 630 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 SLX1AQ9BQ83 275 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 TP63Q9H3D4 680 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 NKIRAS2Q9NYR9 191 aa11.53□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF629Q9UEG4 869 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-202ENST00000339872 CCNKO75909 580 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 CYB5AP00167 134 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 CST4P01036 141 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 IGKV3-15P01624 115 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 MELTFP08582 738 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 HOXD4P09016 255 aaPredicted RBP11.52□□□□□ -0.57
HMGB1-202ENST00000339872 H2AFB2P0C5Z0 115 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 HIST1H1DP16402 221 aaKnown RBP11.52□□□□□ -0.57
HMGB1-202ENST00000339872 PSMB1P20618 241 aaKnown RBP11.52□□□□□ -0.57
HMGB1-202ENST00000339872 TMEM50BP56557 158 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 TAS2R19P59542 299 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 LINC00303Q3SY05 128 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 STEAP1BQ6NZ63 245 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 ARHGAP5-AS1Q96IT6 56 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 J3QW42 95 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 GSTP1P09211 210 aaKnown RBP11.52□□□□□ -0.57
HMGB1-202ENST00000339872 GLI4P10075 376 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 CPT2P23786 658 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 CEACAM8P31997 349 aaPredicted RBP11.52□□□□□ -0.57
HMGB1-202ENST00000339872 GNG2P59768 71 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 PPP1CBP62140 327 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 PDZK1IP1Q13113 114 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 OR2T2Q6IF00 324 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF782Q6ZMW2 699 aaPredicted RBP11.52□□□□□ -0.57
HMGB1-202ENST00000339872 DOLPP1Q86YN1 238 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 CALHM1Q8IU99 346 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 FAM89BQ8N5H3 189 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 TMEM229BQ8NBD8 167 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 HPSE2Q8WWQ2 592 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 SFXN3Q9BWM7 321 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 TM2D1Q9BX74 207 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 ASF1BQ9NVP2 202 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 KCNK7Q9Y2U2 307 aa11.52□□□□□ -0.57
HMGB1-202ENST00000339872 HMX3A6NHT5 357 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ANKRD30BLA7E2S9 258 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 LILRA1O75019 489 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 GABRR1P24046 479 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 HLA-DMAP28067 261 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 BLVRBP30043 206 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-202ENST00000339872 RCVRNP35243 200 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 GPM6AP51674 278 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ERVS71-1P61550 626 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF474Q6S9Z5 364 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-202ENST00000339872 GVQW1Q8N7I0 195 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF611Q8N823 705 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OR56B4Q8NH76 319 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 CYYR1Q96J86 154 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OR2J1Q9GZK6 312 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 FGF23Q9GZV9 251 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-202ENST00000339872 IFT46Q9NQC8 304 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 SH3BGRL2Q9UJC5 107 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 TINAGQ9UJW2 476 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 FLVCR2Q9UPI3 526 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 IGF2RP11717 2491 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 IGKV1-12A0A0C4DH73 117 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 PQLC2LA1A4F0 135 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OR5H1A6NKK0 313 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF736B4DX44 427 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-202ENST00000339872 MFNGO00587 321 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 SSX5O60225 188 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ICMTO60725 284 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 IGKV1D-12P01611 117 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 CEACAM21Q3KPI0 293 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OR4S1Q8NGB4 309 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OR51F2Q8NH61 342 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 Q96M66 194 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OR10A4Q9H209 315 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 OBP2BQ9NPH6 170 aa11.51□□□□□ -0.57
HMGB1-202ENST00000339872 ZGRF1Q86YA3 2104 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 PIEZO2Q9H5I5 2752 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 A0A0A6YYJ9 748 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 A8MV72 311 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-202ENST00000339872 C1QTNF9BB2RNN3 333 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 M0QYG6 137 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 ZNF780AO75290 641 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-202ENST00000339872 RAB3DO95716 219 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 CECR9P0C854 216 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 C1QTNF9P0C862 333 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 TRAPPC2P0DI81 140 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 TRAPPC2BP0DI82 140 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 ID4P47928 161 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 ASCL4Q6XD76 172 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 SLC25A26Q70HW3 274 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 PXT1Q8NFP0 134 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 OR51S1Q8NGJ8 323 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 OR1J1Q8NGS3 322 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 GIMAP1Q8WWP7 306 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 HIST1H2AAQ96QV6 131 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 BEX2Q9BXY8 128 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 ACTR6Q9GZN1 396 aa11.5□□□□□ -0.57
HMGB1-202ENST00000339872 BEX1Q9HBH7 125 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms