RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SPACA5Q96QH8 159 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 CHCHD6Q9BRQ6 235 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 TLNRD1Q9H1K6 362 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 TCF7L1Q9HCS4 588 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 TXNL4BQ9NX01 149 aaKnown RBP18.72■□□□□ 0.59
SDC3-202ENST00000339394 SSR3Q9UNL2 185 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 ANKRD17O75179 2603 aaKnown RBP18.72■□□□□ 0.59
SDC3-202ENST00000339394 LRP5LA4QPB2 252 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 A6NLC8 198 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 MAS1P04201 325 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 HCKP08631 526 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 BDKRB2P30411 391 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 HFEQ30201 348 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 LHFPL2Q6ZUX7 228 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 RNF144BQ7Z419 303 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 ANGPTL5Q86XS5 388 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 ZNF573Q86YE8 665 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 ZNF525Q8N782 197 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 SCCPDHQ8NBX0 429 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 FUNDC2Q9BWH2 189 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 FN3KRPQ9HA64 309 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 NEK6Q9HC98 313 aa18.72■□□□□ 0.59
SDC3-202ENST00000339394 LOC100506127A0A0U1RQW1 187 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 MAGEB3O15480 346 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 ATP1B3P54709 279 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 KISS1Q15726 138 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 HAGHLQ6PII5 290 aaPredicted RBP18.71■□□□□ 0.59
SDC3-202ENST00000339394 ZNF826PQ6ZT77 177 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 GPR141Q7Z602 305 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 CALHM1Q8IU99 346 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 Q8TCH9 128 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 DLL4Q9NR61 685 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 C1orf123Q9NWV4 160 aa18.71■□□□□ 0.59
SDC3-202ENST00000339394 RP2O75695 350 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 ALDOBP05062 364 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 TIMM50Q3ZCQ8 353 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 CRIP3Q6Q6R5 217 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 SNTG1Q9NSN8 517 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 TMEM106BQ9NUM4 274 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 DCAF16Q9NXF7 216 aa18.7■□□□□ 0.58
SDC3-202ENST00000339394 ADRA2CP18825 462 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 DDI2Q5TDH0 399 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 WDR82Q6UXN9 313 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 LRRTM1Q86UE6 522 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 AQP3Q92482 292 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 RFT1Q96AA3 541 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 CENPOQ9BU64 300 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 MYOZ1Q9NP98 299 aaPredicted RBP18.69■□□□□ 0.58
SDC3-202ENST00000339394 GSTK1Q9Y2Q3 226 aa18.69■□□□□ 0.58
SDC3-202ENST00000339394 hCG_1807616A0A1W2PRN6 198 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 AIREO43918 545 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 RHBDL1O75783 438 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 CARTPTQ16568 116 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 ZNF181Q2M3W8 571 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 GDPGP1Q6ZNW5 385 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 SATL1Q86VE3 508 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 NKX3-1Q99801 234 aaPredicted RBP18.68■□□□□ 0.58
SDC3-202ENST00000339394 SLITRK2Q9H156 845 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 RNF167Q9H6Y7 350 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 CHODLQ9H9P2 273 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 ARID1AO14497 2285 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 SHISA3A0PJX4 238 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 MEGF11A6BM72 1044 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 TRIM64BA6NI03 449 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 LRRC30A6NM36 301 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 CYB5R3P00387 301 aaPredicted RBP18.68■□□□□ 0.58
SDC3-202ENST00000339394 PLATP00750 562 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 MPZP25189 248 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 ZNF93P35789 620 aaPredicted RBP18.68■□□□□ 0.58
SDC3-202ENST00000339394 HOXA4Q00056 320 aaPredicted RBP18.68■□□□□ 0.58
SDC3-202ENST00000339394 OR5D18Q8NGL1 313 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 OR11L1Q8NGX0 322 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 METTL17Q9H7H0 456 aaPredicted RBP18.68■□□□□ 0.58
SDC3-202ENST00000339394 RNF7Q9UBF6 113 aa18.68■□□□□ 0.58
SDC3-202ENST00000339394 AKAP9Q99996 3911 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 TRAV1-2A0A0B4J238 106 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 J3QT63 122 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 SYNGR1O43759 233 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 IRF2P14316 349 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 TMEM33P57088 247 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 GPR107Q5VW38 600 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 NKAIN3Q8N8D7 197 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 HPS1Q92902 700 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 CPNE2Q96FN4 548 aaPredicted RBP18.67■□□□□ 0.58
SDC3-202ENST00000339394 KCTD7Q96MP8 289 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 GPER1Q99527 375 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 FOXC2Q99958 501 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 PKIBQ9C010 78 aa18.67■□□□□ 0.58
SDC3-202ENST00000339394 MAP1AP78559 2803 aaPredicted RBP18.67■□□□□ 0.58
SDC3-202ENST00000339394 TMEM178BH3BS89 294 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 IFNL4K9M1U5 179 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 MYL9P24844 172 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 CFHR2P36980 270 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 POU3F4P49335 361 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 PDLIM4P50479 330 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 LSM3P62310 102 aaKnown RBP18.66■□□□□ 0.58
SDC3-202ENST00000339394 IL24Q13007 206 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 PDZK1IP1Q13113 114 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 RIN1Q13671 783 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 CLEC2AQ6UVW9 174 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms