RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FAM90A15PP0C7V4 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A13PP0C7W8 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A14PP0C7W9 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A24PP0C7X0 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CBR1P16152 277 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CTSSP25774 331 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 SOX18P35713 384 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 KLRB1Q12918 225 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 BEX5Q5H9J7 111 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 DESI1Q6ICB0 168 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 OR2T2Q6IF00 324 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 Q6ZT83 130 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ARL6IP6Q8N6S5 226 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 SUMF1Q8NBK3 374 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 OR52I2Q8NH67 350 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 SCGB1C1Q8TD33 95 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 DMRTB1Q96MA1 342 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CITED1Q99966 193 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 A6NIN4 97 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 MT-CO2P00403 227 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CELA2AP08217 269 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 RD3LP0DJH9 198 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 GZMHP20718 246 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 EGR4Q05215 589 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 C1orf100Q5SVJ3 147 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 OR10K2Q6IF99 312 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 DBX2Q6ZNG2 339 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FOXRED2Q8IWF2 684 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM58AQ8N1B3 248 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM246Q9BRR3 403 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 C11orf54Q9H0W9 315 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 METTL17Q9H7H0 456 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ISG20L2Q9H9L3 353 aaKnown RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 UFSP2Q9NUQ7 469 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 RNF24Q9Y225 148 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 A0A1B0GTH9 108 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 LOC390937A0A1W2PQ73 354 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 CD79BP40259 229 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 RRAS2P62070 204 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF92Q03936 586 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SLC16A12Q6ZSM3 486 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SLAMF9Q96A28 289 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 PIK3IP1Q96FE7 263 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 C1QTNF6Q9BXI9 259 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 NECAP2Q9NVZ3 263 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 B3GNT2Q9NY97 397 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 IFNL4K9M1U5 179 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 BET1O15155 118 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 UPK3AO75631 287 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 FAM157BP0CG42 384 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 CPN1P15169 458 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 S100A7P31151 101 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 RPL23AP62750 156 aaKnown RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 GK2Q14410 553 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 INPP5JQ15735 1006 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SSX6Q7RTT6 188 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 NAA40Q86UY6 237 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM200AQ86VY9 491 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 DRAXINQ8NBI3 349 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM185AQ8NFB2 350 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 LRRC20Q8TCA0 184 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 TIMP4Q99727 224 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SLC25A31Q9H0C2 315 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 OR2S2Q9NQN1 319 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 DLL4Q9NR61 685 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 MSRB2Q9Y3D2 182 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ANK1P16157 1881 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ETV2O00321 342 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 DCTN6O00399 190 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 FABP7O15540 132 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 AKR7A2O43488 359 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 RP2O75695 350 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 LYZL6O75951 148 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 GRPP07492 148 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF708P17019 499 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 CDAP32320 146 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 GABRA6Q16445 453 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 CMTM4Q8IZR5 234 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SPAG16Q8N0X2 631 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 HSD17B8Q92506 261 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 FBXO17Q96EF6 278 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SUCNR1Q9BXA5 334 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 C1orf123Q9NWV4 160 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 COPS3Q9UNS2 423 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 CLDN16Q9Y5I7 305 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 FREM3P0C091 2139 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 PCP4P48539 62 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 FOXL2P58012 376 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 MFGE8Q08431 387 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ETFDHQ16134 617 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ZMAT3Q9HA38 289 aaKnown RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 AKIP1Q9NQ31 210 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 ERRFI1Q9UJM3 462 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 F5H5P2 479 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 SEMA7AO75326 666 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 HLA-DOBP13765 273 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 EPHA1P21709 976 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 BLOC1S1P78537 153 aa6.04□□□□□ -1.44
SF3B1-201ENST00000335508 IAH1Q2TAA2 248 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-201ENST00000335508 FADS6Q8N9I5 356 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms