RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ERICH2A1L162 156 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 RAB19A4D1S5 217 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 IQCF5A8MTL0 148 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 PDZK1P1A8MUH7 402 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ANKRD65E5RJM6 399 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 GOLGA6L19H0YKK7 550 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 SMKR1H3BMG3 65 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 K7EMT4 169 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 RFXANKO14593 260 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 NUPL2O15504 423 aaKnown RBP2.01□□□□□ -2.09
HMGB1-201ENST00000326004 DPM1O60762 260 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 MPDU1O75352 247 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 SLC25A14O95258 325 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-201ENST00000326004 TDP2O95551 362 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 AIFM1O95831 613 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 TACSTD2P09758 323 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CT45A6P0DMU7 189 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CT45A5P0DMU8 189 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CT45A7P0DMV0 189 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF823P16415 610 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CSNK2A2P19784 350 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-201ENST00000326004 IVDP26440 423 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 NUTF2P61970 127 aaKnown RBP2.01□□□□□ -2.09
HMGB1-201ENST00000326004 TWF1Q12792 350 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ERCC8Q13216 396 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 POU2AF1Q16633 256 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CT45A1Q5HYN5 189 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 TPRG1LQ5T0D9 272 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 N4BP2L1Q5TBK1 243 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ANKRD22Q5VYY1 191 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 PDPK2PQ6A1A2 396 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 PRMT9Q6P2P2 845 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 COPS6Q7L5N1 327 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 OR2W3Q7Z3T1 314 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 TMEM150AQ86TG1 271 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 COMTD1Q86VU5 262 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CBLN2Q8IUK8 224 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 TMEM105Q8N8V8 129 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ZFP41Q8N8Y5 198 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 OR10G2Q8NGC3 310 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CT45A3Q8NHU0 189 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ERMNQ8TAM6 284 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ITFG1Q8TB96 612 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 DNAJC1Q96KC8 554 aaKnown RBP2.01□□□□□ -2.09
HMGB1-201ENST00000326004 GLT1D1Q96MS3 346 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 SERPINB12Q96P63 405 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 FOXC2Q99958 501 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 MAP1LC3CQ9BXW4 147 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 KIR3DX1Q9H7L2 352 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 KCNJ16Q9NPI9 418 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 NRBP2Q9NSY0 501 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 NECAP2Q9NVZ3 263 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 CTSFQ9UBX1 484 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 ST3GAL6Q9Y274 331 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 MYO9AB2RTY4 2548 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 GVINP1Q7Z2Y8 2422 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 HECTD1Q9ULT8 2610 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 KTN1Q86UP2 1357 aaKnown RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 IBTKQ9P2D0 1353 aaPredicted RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF831Q5JPB2 1677 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ITPR3Q14573 2671 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 MROH7Q68CQ1 1323 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 EVC2Q86UK5 1308 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 MAPK8IP3Q9UPT6 1336 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1W2PRF3 423 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 A0A1W2PRM7 423 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 GOLGA6L10A6NI86 522 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 BET1O15155 118 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 SRP72O76094 671 aaKnown RBP2□□□□□ -2.09
HMGB1-201ENST00000326004 AQP8O94778 261 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 VAPBO95292 243 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ARG1P05089 322 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 FABP3P05413 133 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 GNAO1P09471 354 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 TLX1NBP0CAT3 122 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 RAB4AP20338 218 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 SPAM1P38567 509 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 CDKN2BP42772 138 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 CSNK1A1P48729 337 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 RND2P52198 227 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ARG2P78540 354 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 MXD1Q05195 221 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 GINS1Q14691 196 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ANGPT1Q15389 498 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 OR7A5Q15622 319 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 VAMP3Q15836 100 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 C5orf64Q2M2E5 130 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 KRTAP21-3Q3LHN1 58 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 THEM4Q5T1C6 240 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 CCNJQ5T5M9 372 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 SPECC1LQ69YQ0 1117 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 ERICH5Q6P6B1 374 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 C12orf54Q6X4T0 127 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 VKORC1L1Q8N0U8 176 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 C15orf56Q8N910 161 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 CCDC112Q8NEF3 446 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 NOXO1Q8NFA2 376 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 OR2A1Q8NGT9 310 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 UBALD1Q8TB05 177 aa2□□□□□ -2.09
HMGB1-201ENST00000326004 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms