RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 ST6GALNAC5Q9BVH7 336 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SMOC1Q9H4F8 434 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 NECAP2Q9NVZ3 263 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 HS3ST3A1Q9Y663 406 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 CRYM-AS1A6NIL9 109 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 C4orf47A7E2U8 309 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 ZNF732B4DXR9 585 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 IFNA5P01569 189 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SRP19P09132 144 aaKnown RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 NOVA1P51513 510 aaKnown RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 POU3F1Q03052 451 aaPredicted RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 RELQ04864 619 aaPredicted RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 ZP2Q05996 745 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SLC22A6Q4U2R8 563 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 ETV3LQ6ZN32 361 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 TTLL10Q6ZVT0 673 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 GALNTL5Q7Z4T8 443 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 DPPA2Q7Z7J5 298 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 ZNF283Q8N7M2 679 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 GPR119Q8TDV5 335 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 P2RX4Q99571 388 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 TM2D1Q9BX74 207 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 CHST11Q9NPF2 352 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SERINC1Q9NRX5 453 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 COPS7AQ9UBW8 275 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 HCFC2Q9Y5Z7 792 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 ZNF106Q9H2Y7 1883 aaKnown RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SOCS1O15524 211 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SCGB1D2O95969 90 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 FOLR1P15328 257 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SLC37A1P57057 533 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 KCNMB1Q16558 191 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 FIP1L1Q6UN15 594 aaKnown RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 OR51E1Q8TCB6 317 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 RNASEH2CQ8TDP1 164 aaKnown RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 GPBAR1Q8TDU6 330 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 PINX1Q96BK5 328 aaKnown RBP4.22□□□□□ -1.73
PTPN13-201ENST00000316707 SERGEFQ9UGK8 458 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 CA14Q9ULX7 337 aa4.22□□□□□ -1.73
PTPN13-201ENST00000316707 CCDC88CQ9P219 2028 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 RPL36A-HNRNPH2H7BZ11 118 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 K7EQS6 105 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 M0QZK8 103 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 GPR37O15354 613 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 GGCTO75223 188 aaKnown RBP4.21□□□□□ -1.73
PTPN13-201ENST00000316707 IGHG1P01857 330 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 CTSSP25774 331 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 WASP42768 502 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 GABREP78334 506 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 DLK1P80370 383 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 NHLH2Q02577 135 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 TLE3Q04726 772 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 COL9A2Q14055 689 aaPredicted RBP4.21□□□□□ -1.73
PTPN13-201ENST00000316707 HYAL4Q2M3T9 481 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 C1QL3Q5VWW1 255 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 LINC00346Q8IVM7 164 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 FBXL14Q8N1E6 418 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 ADPRHL1Q8NDY3 354 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 ROBO4Q8WZ75 1007 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 FBXO17Q96EF6 278 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 MMABQ96EY8 250 aaPredicted RBP4.21□□□□□ -1.73
PTPN13-201ENST00000316707 CLDN16Q9Y5I7 305 aa4.21□□□□□ -1.73
PTPN13-201ENST00000316707 ZNF726A6NNF4 738 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 SDCBPO00560 298 aaPredicted RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 MSX1P28360 303 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 HERV-K104P61576 105 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 HSF1Q00613 529 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 IL24Q13007 206 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 GAMTQ14353 236 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 C1orf189Q5VU69 101 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 WDR5BQ86VZ2 330 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 SPSB1Q96BD6 273 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 ACY3Q96HD9 319 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 RCC1LQ96I51 464 aaKnown RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 ACTR3CQ9C0K3 210 aaPredicted RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 METTL9Q9H1A3 318 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 ALKBH4Q9NXW9 302 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 CKAP5Q14008 2032 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 TDRD15B5MCY1 1934 aaKnown RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 GEMIN2O14893 280 aaKnown RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 TNFP01375 233 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 ST6GAL1P15907 406 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 CCKARP32238 428 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 NKX2-1P43699 371 aaPredicted RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 POMZP3Q6PJE2 187 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 PLXDC2Q6UX71 529 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 SPPL3Q8TCT6 385 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 ERGIC1Q969X5 290 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 NKX2-4Q9H2Z4 354 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 PLEKHF2Q9H8W4 249 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 AK3Q9UIJ7 227 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 VSTM2BA6NLU5 285 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 DHRS7CA6NNS2 312 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 ZNF724A8MTY0 619 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 TCAPO15273 167 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 RND3P61587 244 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 H1FOOQ8IZA3 346 aaPredicted RBP4.21□□□□□ -1.74
PTPN13-201ENST00000316707 OR2I1PQ8NGU4 316 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 DDIT4LQ96D03 193 aa4.21□□□□□ -1.74
PTPN13-201ENST00000316707 YPEL4Q96NS1 127 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms