RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TRIB3Q96RU7 358 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 PRDM14Q9GZV8 571 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 WDR13Q9H1Z4 485 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 MS4A6AQ9H2W1 248 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SELENOKQ9Y6D0 94 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 XRN1Q8IZH2 1706 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ZFYVE16Q7Z3T8 1539 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 KIF20BQ96Q89 1820 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SIGLEC16A6NMB1 481 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 AHRRA9YTQ3 701 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 GGTLC3B5MD39 225 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 PPP1R11O60927 126 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 LRP3O75074 770 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 COL8A1P27658 744 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 DUSP3P51452 185 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ELAVL2Q12926 359 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 RPS26P11Q5JNZ5 115 aaPredicted RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM170BQ5T4T1 132 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 LCTLQ6UWM7 567 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 MOB3BQ86TA1 216 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 HARBI1Q96MB7 349 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SFXN1Q9H9B4 322 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 VSIG4Q9Y279 399 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 P2RY4P51582 365 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 DCAF7P61962 342 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 NTHL1P78549 312 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ACVR1Q04771 509 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 WDTC1Q8N5D0 677 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 MPLKIPQ8TAP9 179 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 MUCL1Q96DR8 90 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 CHST2Q9Y4C5 530 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ATP7BP35670 1465 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 CPDO75976 1380 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 FOXH1O75593 365 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 CST7O76096 145 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 MICBQ29980 383 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 C5orf46Q6UWT4 87 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 UNC5DQ6UXZ4 953 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 RTN4RL2Q86UN3 420 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 OR4K5Q8NGD3 323 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 DERL3Q96Q80 235 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 C12orf49Q9H741 205 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC23A1Q9UHI7 598 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 RNF11Q9Y3C5 154 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ITSN1Q15811 1721 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 LOC730098B7Z3J9 87 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 SOD2P04179 222 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 GABRA1P14867 456 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 HSPE1P61604 102 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 MRPS11P82912 194 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ANKRD39Q53RE8 183 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 PRSS48Q7RTY5 328 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 GALNT16Q8N428 558 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 OR52N2Q8NGI0 321 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 P2RY11Q96G91 374 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 GPR137Q96N19 417 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 NDUFB11Q9NX14 153 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 ONECUT1Q9UBC0 465 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 EPDR1Q9UM22 224 aa6.89□□□□□ -1.31
LIMCH1-201ENST00000313860 LINC00862A6NCI5 91 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 SPNP16150 400 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 PI3P19957 117 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 CD22P20273 847 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 GALP22466 123 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC6A1P30531 599 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 DCTDP32321 178 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 C2orf83Q53S99 150 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 MRM1Q6IN84 353 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM65Q6PI78 240 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 INO80CQ6PI98 192 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 TDHQ8IZJ6 230 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 GATD1Q8NB37 220 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 NETO1Q8TDF5 533 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 INPP5KQ9BT40 448 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 APOBEC3GQ9HC16 384 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 UQCC1Q9NVA1 299 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 TRAV9-2A0A087WT02 112 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 SDC1P18827 310 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 POU3F2P20265 443 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 GABRB3P28472 473 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 GDF5P43026 501 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 C9orf57Q5W0N0 161 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 FRG2Q64ET8 278 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 PDZD3Q86UT5 571 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 CILP2Q8IUL8 1156 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 RHBDD1Q8TEB9 315 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 FRG2BQ96QU4 278 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 JAM3Q9BX67 310 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF665Q9H7R5 613 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 WSB1Q9Y6I7 421 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 PXDNLA1KZ92 1463 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 KIR2DS1A0A191URI9 304 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 ANKRD63C9JTQ0 380 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 CTSVO60911 334 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 PPIAP62937 165 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF56Q15929 161 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 ILDR1Q86SU0 546 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 H7BY64 318 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 EMC8O43402 210 aa6.88□□□□□ -1.31
LIMCH1-201ENST00000313860 SPINK8P0C7L1 97 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms