RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SEMA6DQ8NFY4 1073 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 WNT2BQ93097 391 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 SPTSSAQ969W0 71 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 SAT2Q96F10 170 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-201ENST00000238112 NAA11Q9BSU3 229 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-201ENST00000238112 UBE2ZQ9H832 354 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-201ENST00000238112 TAF9BQ9HBM6 251 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 MCTS1Q9ULC4 181 aaKnown RBP16.39■□□□□ 0.21
CPSF3-201ENST00000238112 SNAPINO95295 136 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 CELA2AP08217 269 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 CYC1P08574 325 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 DBHP09172 617 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 IAH1Q2TAA2 248 aaPredicted RBP16.39■□□□□ 0.21
CPSF3-201ENST00000238112 MST1LQ2TV78 715 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 OPN5Q6U736 354 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 FOXL2NBQ6ZUU3 175 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 SGPP2Q8IWX5 399 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 CCDC54Q8NEL0 328 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 GNRHR2Q96P88 292 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 PIGQQ9BRB3 760 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 TLNRD1Q9H1K6 362 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 UQCC1Q9NVA1 299 aa16.39■□□□□ 0.21
CPSF3-201ENST00000238112 LY6G6EA0A0G2JKS1 128 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 TMEM225BP0DP42 221 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 OTX1P32242 354 aaPredicted RBP16.38■□□□□ 0.21
CPSF3-201ENST00000238112 ZNF84P51523 738 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 RSPO1Q2MKA7 263 aaPredicted RBP16.38■□□□□ 0.21
CPSF3-201ENST00000238112 RPL7L1Q6DKI1 246 aaKnown RBP16.38■□□□□ 0.21
CPSF3-201ENST00000238112 DTX1Q86Y01 620 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 OR9K2Q8NGE7 335 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 OR10Z1Q8NGY1 313 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 FNDC9Q8TBE3 224 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 JSRP1Q96MG2 331 aaPredicted RBP16.38■□□□□ 0.21
CPSF3-201ENST00000238112 UCN2Q96RP3 112 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 SEC11CQ9BY50 192 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 ULBP2Q9BZM5 246 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 OCIAD1Q9NX40 245 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 U3KQA8 63 aa16.38■□□□□ 0.21
CPSF3-201ENST00000238112 IGKV1D-8A0A087WSZ0 117 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 PMS2P1A4D2B8 440 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 NDUFA2O43678 99 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 LRP3O75074 770 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 PVALBP20472 110 aaPredicted RBP16.37■□□□□ 0.21
CPSF3-201ENST00000238112 MTCP1P56278 107 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 HIST1H3AP68431 136 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 RBM39Q14498 530 aaKnown RBP16.37■□□□□ 0.21
CPSF3-201ENST00000238112 SMCO1Q147U7 214 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 HIST2H3PS2Q5TEC6 136 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 HIST2H3AQ71DI3 136 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 CBLN2Q8IUK8 224 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 IQCF2Q8IXL9 164 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 TMEM123Q8N131 208 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 RHOFQ9HBH0 211 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 MLXQ9UH92 298 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 DKKL1Q9UK85 242 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 DHRS7CA6NNS2 312 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 RRP8O43159 456 aaKnown RBP16.37■□□□□ 0.21
CPSF3-201ENST00000238112 H2AFB1P0C5Y9 115 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 HKR1P10072 659 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 DSCR4P56555 118 aaPredicted RBP16.37■□□□□ 0.21
CPSF3-201ENST00000238112 MAML2Q8IZL2 1156 aaPredicted RBP16.37■□□□□ 0.21
CPSF3-201ENST00000238112 SMIM8Q96KF7 97 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 Q96M66 194 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 CNTNAP3Q9BZ76 1288 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 GPR173Q9NS66 373 aa16.37■□□□□ 0.21
CPSF3-201ENST00000238112 NXT1Q9UKK6 140 aaKnown RBP16.37■□□□□ 0.21
CPSF3-201ENST00000238112 K7EPK0 472 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 MED6O75586 246 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 IFNA21P01568 189 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 CTSDP07339 412 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-201ENST00000238112 CD63P08962 238 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 CCL3P10147 92 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 CXCL12P48061 93 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 CHAF1BQ13112 559 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 SNAI3Q3KNW1 292 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 Q6ZSR3 168 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 FAM71E2Q8N5Q1 922 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 HDHD3Q9BSH5 251 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-201ENST00000238112 SAV1Q9H4B6 383 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-201ENST00000238112 WDR54Q9H977 334 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 LIFP15018 202 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 ZNF708P17019 499 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 HFEQ30201 348 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 DHRS7BQ6IAN0 325 aaPredicted RBP16.36■□□□□ 0.21
CPSF3-201ENST00000238112 ANGPTL4Q9BY76 406 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 METTL9Q9H1A3 318 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 ANXA10Q9UJ72 324 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 EDARQ9UNE0 448 aa16.36■□□□□ 0.21
CPSF3-201ENST00000238112 G3V3Y1 287 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 F12P00748 615 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 RCC1P18754 421 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 RPL12P30050 165 aaKnown RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 CAV2P51636 162 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 RSU1Q15404 277 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 RSPO4Q2I0M5 234 aaPredicted RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 RPUSD3Q6P087 351 aaKnown RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 PLXDC2Q6UX71 529 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 SGK3Q96BR1 496 aa16.35■□□□□ 0.21
CPSF3-201ENST00000238112 INTS12Q96CB8 462 aaKnown RBP16.35■□□□□ 0.21
CPSF3-201ENST00000238112 FBXO17Q96EF6 278 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms