RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PRDM7Q9NQW5 492 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 A0A1W2PR77 199 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 MAGEB4O15481 346 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 CTSVO60911 334 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ARAFP10398 606 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TGM1P22735 817 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LAPTM4AQ15012 233 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TESK1Q15569 626 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 RIPPLY2Q5TAB7 128 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 GDPGP1Q6ZNW5 385 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 CXorf67Q86X51 503 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 KCNG3Q8TAE7 436 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 LKAAEAR1Q8TD35 194 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 SECTM1Q8WVN6 248 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 TLCD1Q96CP7 247 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 NMNAT1Q9HAN9 279 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF586Q9NXT0 402 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 AUP1Q9Y679 476 aa4.48□□□□□ -1.69
SCN1A-218ENST00000640036 F8W036 122 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 NME2P1O60361 137 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ARG1P05089 322 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OR4E1P0C645 316 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 DAOP14920 347 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 NME2P22392 152 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SLC37A1P57057 533 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 CCL8P80075 99 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OR2T2Q6IF00 324 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SERPINA11Q86U17 422 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ANKRD9Q96BM1 317 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ITPKCQ96DU7 683 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 C4orf45Q96LM5 186 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM56Q96MV1 263 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 C12orf10Q9HB07 376 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SLC2A9Q9NRM0 540 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SIRT3Q9NTG7 399 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HS3ST3B1Q9Y662 390 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 PDCD11Q14690 1871 aaKnown RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 KRBOX1C9JBD0 128 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 MT-ND4LP03901 98 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SCGB1A1P11684 91 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SDHAP31040 664 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HAAOP46952 286 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 BPIFB3P59826 476 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 LTBQ06643 244 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 FOXO1Q12778 655 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 PPP1R8Q12972 351 aaKnown RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 GK2Q14410 553 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OTUD1Q5VV17 481 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 NCR3LG1Q68D85 454 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 LCN8Q6JVE9 175 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 UBE2DNLQ8IWF7 75 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SLC22A18ASQ8N1D0 253 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ZPLD1Q8TCW7 415 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SDSLQ96GA7 329 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 CHRNA10Q9GZZ6 450 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TXNIPQ9H3M7 391 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 PARD6AQ9NPB6 346 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 COA4Q9NYJ1 87 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TREM2Q9NZC2 230 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 LRRC3CA6NJW4 275 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HPGDSO60760 199 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SORBS2O94875 1100 aaKnown RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 C1QAP02745 245 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 MT-ND4P03905 459 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 VSIG10L2P0DP72 767 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 THBS4P35443 961 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 PXDC1Q5TGL8 231 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 EPGNQ6UW88 154 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 FAM156AQ8NDB6 213 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SERTAD4Q9NUC0 356 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 CES1P1Q9UKY3 287 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 DNAJC15Q9Y5T4 150 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM30CPA0ZSE6 113 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SOCS6O14544 535 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 SLC16A6O15403 523 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 RECKO95980 971 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 PNPP00491 289 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HRASP01112 189 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 USF1P22415 310 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 GALNSP34059 522 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OR10A3P58181 314 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 IL13RA1P78552 427 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ZXDBP98169 803 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 AVPI1Q5T686 147 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF626Q68DY1 528 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 RFPL4BQ6ZWI9 263 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OR2S2Q9NQN1 319 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF331Q9NQX6 463 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 CDRT15L2A8MXV6 281 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 H7C1C5 153 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OR7A17O14581 309 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 IGLV3-19P01714 112 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 LSM11P83369 360 aaKnown RBP eCLIP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HSD17B11Q8NBQ5 300 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OIT3Q8WWZ8 545 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 CMBLQ96DG6 245 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 NEIL1Q96FI4 390 aaPredicted RBP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms