RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SULF2Q8IWU5 870 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 FAM71E2Q8N5Q1 922 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CCDC71LQ8N9Z2 235 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 OR52H1Q8NGJ2 320 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 OR1S2Q8NGQ3 325 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 OR13C8Q8NGS7 320 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF721Q8TF20 911 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SPTSSAQ969W0 71 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 C14orf79Q96F83 325 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 AMELYQ99218 206 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 SYT3Q9BQG1 590 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 C1QTNF6Q9BXI9 259 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 RGCCQ9H4X1 137 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 ZMAT3Q9HA38 289 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 OR2S2Q9NQN1 319 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 LANCL2Q9NS86 450 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 EHFQ9NZC4 300 aa3.53□□□□□ -1.84
SCN1A-214ENST00000637038 MYEF2Q9P2K5 600 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CARHSP1Q9Y2V2 147 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 MRPS18BQ9Y676 258 aaKnown RBP3.53□□□□□ -1.84
SCN1A-214ENST00000637038 CA11O75493 328 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 FARS2O95363 451 aaKnown RBP3.53□□□□□ -1.85
SCN1A-214ENST00000637038 PNPP00491 289 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 IGLV3-19P01714 112 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF735P0CB33 412 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 THBS4P35443 961 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 RAB5CP51148 216 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 SLC35A1P78382 337 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 SRPXP78539 464 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 SLC9A3R2Q15599 337 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 C2orf68Q2NKX9 166 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 NSUN5P2Q63ZY6 315 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 OR10K2Q6IF99 312 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 MEX3BQ6ZN04 569 aaKnown RBP3.53□□□□□ -1.85
SCN1A-214ENST00000637038 LFNGQ8NES3 379 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 NOXO1Q8NFA2 376 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 OR4S1Q8NGB4 309 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 OR5AP2Q8NGF4 316 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 IFI44Q8TCB0 444 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 MARCH1Q8TCQ1 289 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 TMED6Q8WW62 240 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 C11orf40Q8WZ69 217 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF524Q96C55 264 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF75AQ96N20 296 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 OR11A1Q9GZK7 315 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 MS4A7Q9GZW8 240 aaPredicted RBP3.53□□□□□ -1.85
SCN1A-214ENST00000637038 FN3KRPQ9HA64 309 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 TAF9BQ9HBM6 251 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 G6PC2Q9NQR9 355 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 RHBDD3Q9Y3P4 386 aa3.53□□□□□ -1.85
SCN1A-214ENST00000637038 ASPMQ8IZT6 3477 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SCN3AQ9NY46 2000 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 CDC14CA4D256 554 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 RNF222A6NCQ9 220 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 DNASE2O00115 360 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-214ENST00000637038 RAB27BO00194 218 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 ADAM10O14672 748 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SSX5O60225 188 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 DOK2O60496 412 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 ZFAND5O76080 213 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 GPANK1O95872 356 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 CST4P01036 141 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 PRH1P02810 166 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 IGHV4-34P06331 123 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 GNB3P16520 340 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 RFC3P40938 356 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SLC6A9P48067 706 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 NPY4RP50391 375 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 ECH1Q13011 328 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SQSTM1Q13501 440 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 GFOD2Q3B7J2 385 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF813Q6ZN06 617 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SPRED2Q7Z698 418 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 PLPP5Q8NEB5 264 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 Q8NFD4 153 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 OR4D6Q8NGJ1 314 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 OR51A2Q8NGJ7 313 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 PP6455Q8WZ26 134 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 C10orf35Q96D05 121 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 FAM71F1Q96KD3 344 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-214ENST00000637038 PSMG3-AS1Q96PY0 264 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SPIN2AQ99865 258 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SPIN2BQ9BPZ2 258 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 KCNK15Q9H427 330 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 LPAR3Q9UBY5 353 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 STRAPQ9Y3F4 350 aaKnown RBP3.52□□□□□ -1.85
SCN1A-214ENST00000637038 GOLGA4Q13439 2230 aaKnown RBP3.52□□□□□ -1.85
SCN1A-214ENST00000637038 IGKV3D-11A0A0A0MRZ8 115 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 TRBV6-7A0A0A0MS04 114 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 A0A1W2PNV4 684 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 PMS2P1A4D2B8 440 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 LINC00587B1AMM8 73 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 LMO7DNF2Z398 122 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 F8VVB4 439 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 F8VWA3 439 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 EFSO43281 561 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 FGF16O43320 207 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 CDC14BO60729 498 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 SMPD2O60906 423 aa3.52□□□□□ -1.85
SCN1A-214ENST00000637038 NPIPB7O75200 414 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms