RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, human

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBE1-208	ENST00000604743	SCGB2A2	Q13296	93 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	MICB	Q29980	383 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	CEACAM21	Q3KPI0	293 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	SLC25A30	Q5SVS4	291 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF684	Q5T5D7	378 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	TEX36	Q5VZQ5	186 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	LPCAT4	Q643R3	524 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF841	Q6ZN19	808 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	CATSPERD	Q86XM0	798 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF555	Q8NEP9	628 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR5T2	Q8NGG2	359 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR14K1	Q8NGZ2	314 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	RAB40A	Q8WXH6	277 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	RORB	Q92753	470 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	CCL13	Q99616	98 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	NUDT16L1	Q9BRJ7	211 aa	Known RBP	12	□□□□□ -0.49
TUBE1-208	ENST00000604743	ADI1	Q9BV57	179 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	TLNRD1	Q9H1K6	362 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	WDR13	Q9H1Z4	485 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	AMBN	Q9NP70	447 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	ACOXL	Q9NUZ1	547 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743	DNAJB11	Q9UBS4	358 aa		12	□□□□□ -0.49
TUBE1-208	ENST00000604743		A0A1B0GVI7	797 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743		A0A1B0GW55	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	TNFRSF13B	O14836	293 aa	Predicted RBP	11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	NDUFA2	O43678	99 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	MPZL2	O60487	215 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	RHBDL1	O75783	438 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L2	P0CJ85	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L3	P0CJ86	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L4	P0CJ87	422 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L5	P0CJ88	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L6	P0CJ89	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L7	P0CJ90	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	MUC1	P15941	1255 aa	Predicted RBP	11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	GABRB1	P18505	474 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	NPY4R	P50391	375 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	RCN1	Q15293	331 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	KRTAP24-1	Q3LI83	254 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	WDR38	Q5JTN6	314 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	CLVS2	Q5SYC1	327 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4L9	Q6RFH8	374 aa	Predicted RBP	11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DOK3	Q7L591	496 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	PHC2	Q8IXK0	858 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR5A2	Q8NGI9	324 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	RHOXF1	Q8NHV9	184 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	ST8SIA4	Q92187	359 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	LGALS12	Q96DT0	336 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743		Q96MT0	163 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	SMURF1	Q9HCE7	757 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	SMPD3	Q9NY59	655 aa	Predicted RBP	11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	DUX4	Q9UBX2	424 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743		V9GYS6	101 aa		11.99	□□□□□ -0.49
TUBE1-208	ENST00000604743	IGHV3OR16-10	A0A075B7F0	116 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	SRRM5	B3KS81	715 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	C22orf46	C9J442	243 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743		J3QLW9	94 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	DVL1	O14640	695 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	SYT7	O43581	403 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	TFF1	P04155	84 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	DBT	P11182	482 aa	Known RBP	11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF19	P17023	458 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	GLRA1	P23415	457 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR12D2	P58182	307 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ACTC1	P68032	377 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ACTA1	P68133	377 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	PAX2	Q02962	417 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF91	Q05481	1191 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	PAX8	Q06710	450 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	FAM76B	Q5HYJ3	339 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZBTB37	Q5TC79	503 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	HAGHL	Q6PII5	290 aa	Predicted RBP	11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	LHFPL3	Q86UP9	236 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	RDH10	Q8IZV5	341 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	PRSS35	Q8N3Z0	413 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	FGFRL1	Q8N441	504 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	BPIFB2	Q8N4F0	458 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ACBD7	Q8N6N7	88 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR10Z1	Q8NGY1	313 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF418	Q8TF45	676 aa	Predicted RBP	11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	SLC6A7	Q99884	636 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR51I2	Q9H344	312 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	PLEKHA1	Q9HB21	404 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	EXOG	Q9Y2C4	368 aa	Known RBP	11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	PCDHGB1	Q9Y5G3	927 aa		11.98	□□□□□ -0.49
TUBE1-208	ENST00000604743	KIR2DS1	A0A191URI9	304 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR5B21	A6NL26	309 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743		J3QRE1	110 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	SLC16A6	O15403	523 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	VENTX	O95231	258 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	CLIC3	O95833	236 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	CFHR2	P36980	270 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	KIR3DL2	P43630	455 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	IKZF1	Q13422	519 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	CDON	Q4KMG0	1287 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	CD276	Q5ZPR3	534 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	KRT74	Q7RTS7	529 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	BATF2	Q8N1L9	274 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	FAM216B	Q8N7L0	139 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms