RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 GNG3P63215 75 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 HNRNPA0Q13151 305 aaKnown RBP16.3■□□□□ 0.2
UPF1-209ENST00000600310 MED22Q15528 200 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 TBCEQ15813 527 aaPredicted RBP16.3■□□□□ 0.2
UPF1-209ENST00000600310 DMRTC1Q5HYR2 192 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 C11orf53Q8IXP5 236 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 CIARTQ8N365 385 aaPredicted RBP16.3■□□□□ 0.2
UPF1-209ENST00000600310 OR11L1Q8NGX0 322 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 GPR148Q8TDV2 347 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 HPS1Q92902 700 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 RAB1CQ92928 201 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 TIMD4Q96H15 378 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 TECTBQ96PL2 329 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 TMUB1Q9BVT8 246 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 TLNRD1Q9H1K6 362 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 DHDHQ9UQ10 334 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 WIPI2Q9Y4P8 454 aa16.3■□□□□ 0.2
UPF1-209ENST00000600310 LRRC30A6NM36 301 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 ZNF732B4DXR9 585 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 IRF2P14316 349 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 ZNF20P17024 532 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 CELP19835 753 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 USF1P22415 310 aaPredicted RBP16.29■□□□□ 0.2
UPF1-209ENST00000600310 RBMXP38159 391 aaKnown RBP16.29■□□□□ 0.2
UPF1-209ENST00000600310 MAP2K4P45985 399 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 GPM6AP51674 278 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 LOXL1Q08397 574 aaPredicted RBP16.29■□□□□ 0.2
UPF1-209ENST00000600310 UBE2V2Q15819 145 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 YIF1BQ5BJH7 314 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 KCTD8Q6ZWB6 473 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 UTS2BQ765I0 119 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 PEG10Q86TG7 708 aaKnown RBP16.29■□□□□ 0.2
UPF1-209ENST00000600310 COX4I2Q96KJ9 171 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 ISYNA1Q9NPH2 558 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 C1orf123Q9NWV4 160 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 NPTNQ9Y639 398 aa16.29■□□□□ 0.2
UPF1-209ENST00000600310 C2CD3Q4AC94 2353 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 IGHV4-61A0A0C4DH41 118 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 PNMA8CA0A1B0GUJ8 204 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 LRP5LA4QPB2 252 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 CYB5R3P00387 301 aaPredicted RBP16.28■□□□□ 0.2
UPF1-209ENST00000600310 CD99P14209 185 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 KCTD21Q4G0X4 260 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 AVPI1Q5T686 147 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 ZNF826PQ6ZT77 177 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 C1orf87Q8N0U7 546 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 PARP16Q8N5Y8 322 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 TSEN15Q8WW01 171 aaKnown RBP16.28■□□□□ 0.2
UPF1-209ENST00000600310 OR51I2Q9H344 312 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 ACOT13Q9NPJ3 140 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 RNF7Q9UBF6 113 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 SLC7A11Q9UPY5 501 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 LRCH1Q9Y2L9 728 aa16.28■□□□□ 0.2
UPF1-209ENST00000600310 TRBV5-5A0A0J9YX44 114 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 PQLC2LA1A4F0 135 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 FSTL3O95633 263 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 ATF1P18846 271 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 CFHR2P36980 270 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 RPS11P62280 158 aaKnown RBP eCLIP16.27■□□□□ 0.2
UPF1-209ENST00000600310 EMX1Q04741 257 aaPredicted RBP16.27■□□□□ 0.2
UPF1-209ENST00000600310 MLLT11Q13015 90 aaPredicted RBP16.27■□□□□ 0.2
UPF1-209ENST00000600310 GPR50Q13585 617 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 CNN3Q15417 329 aaKnown RBP16.27■□□□□ 0.2
UPF1-209ENST00000600310 SERPINA12Q8IW75 414 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 SPARTQ8N0X7 666 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 SVOPQ8N4V2 548 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 RPL3LQ92901 407 aaKnown RBP16.27■□□□□ 0.2
UPF1-209ENST00000600310 C18orf12Q96KH6 178 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 ZCCHC4Q9H5U6 513 aa16.27■□□□□ 0.2
UPF1-209ENST00000600310 DYSFO75923 2080 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 TANC2Q9HCD6 1990 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 IGKV1-9A0A0C4DH69 117 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 CDIPTO14735 213 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 ALX3O95076 343 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 IGHV2-70P01814 119 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 CD2P06729 351 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 OCM2P0CE71 109 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 FOSL1P15407 271 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 SOX2P48431 317 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 FUT6P51993 359 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 BTG1P62324 171 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 TPBGQ13641 420 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 ZNF773Q6PK81 442 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 WDR82Q6UXN9 313 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 ZNF367Q7RTV3 350 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 ZNF573Q86YE8 665 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 SCCPDHQ8NBX0 429 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 DNAAF1Q8NEP3 725 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 OR5D14Q8NGL3 314 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 OR13C5Q8NGS8 318 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 MGLLQ99685 303 aa16.26■□□□□ 0.19
UPF1-209ENST00000600310 hCG_1807616A0A1W2PRN6 198 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 WNT9BO14905 357 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 LHBP01229 141 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 HSMCR30P0CW71 290 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 PRKACBP22694 351 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 CHN2P52757 468 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 Q499Y3 187 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 FAM201AQ5SY85 155 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 LRRC28Q86X40 367 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms