RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 C11orf53Q8IXP5 236 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 SYS1Q8N2H4 156 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 MUC20Q8N307 709 aaPredicted RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 PLPP7Q8NBV4 271 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 SCCPDHQ8NBX0 429 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 OR51F2Q8NH61 342 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 TRMT10AQ8TBZ6 339 aaKnown RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 HPSE2Q8WWQ2 592 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 RNF166Q96A37 237 aaPredicted RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 TMEM246Q9BRR3 403 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 FGF23Q9GZV9 251 aaPredicted RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 PATZ1Q9HBE1 687 aaKnown RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 TMEM165Q9HC07 324 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 ERVK-18Q9QC07 812 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 CLEC2DQ9UHP7 191 aa9.3□□□□□ -0.92
LIG1-211ENST00000596457 EXOSC1Q9Y3B2 195 aaKnown RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 RRP15Q9Y3B9 282 aaKnown RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 NSD1Q96L73 2696 aaPredicted RBP9.3□□□□□ -0.92
LIG1-211ENST00000596457 TRBV2A0A0J9YWF9 115 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 FAM230AA0A1W2PPH8 454 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 EFCAB10A6NFE3 127 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 TMEM210A6NLX4 147 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 CEACAM18A8MTB9 384 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 PTGES3LE9PB15 166 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 H0YJX3 145 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 PLPP2O43688 288 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 IFNA2P01563 188 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 GYPAP02724 150 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 MSMBP08118 114 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 RPS2P15880 293 aaKnown RBP9.29□□□□□ -0.92
LIG1-211ENST00000596457 ZNF20P17024 532 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 EGR1P18146 543 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 GTF2A1P52655 376 aaPredicted RBP9.29□□□□□ -0.92
LIG1-211ENST00000596457 SEC61A1P61619 476 aaKnown RBP9.29□□□□□ -0.92
LIG1-211ENST00000596457 GNG3P63215 75 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 RIPK1Q13546 671 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 TMEM155Q4W5P6 130 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 ZBTB37Q5TC79 503 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 LAIR2Q6ISS4 152 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 FAHD2BQ6P2I3 314 aaPredicted RBP9.29□□□□□ -0.92
LIG1-211ENST00000596457 LYPD2Q6UXB3 125 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 WDR82Q6UXN9 313 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 BATF2Q8N1L9 274 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 GCSAMQ8N6F7 178 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 OR5A2Q8NGI9 324 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 OR13C3Q8NGS6 347 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 GATAD2BQ8WXI9 593 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 FGGYQ96C11 551 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 FAHD2AQ96GK7 314 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 ZNF649Q9BS31 505 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 COMMD4Q9H0A8 199 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 SHARPINQ9H0F6 387 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 HIF1ANQ9NWT6 349 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 TMEM160Q9NX00 188 aa9.29□□□□□ -0.92
LIG1-211ENST00000596457 DIMT1Q9UNQ2 313 aaKnown RBP9.29□□□□□ -0.92
LIG1-211ENST00000596457 CAB39Q9Y376 341 aaPredicted RBP9.29□□□□□ -0.92
LIG1-211ENST00000596457 ABCA1O95477 2261 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 TRAV38-1A0A0B4J264 116 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 ANKRD61A6NGH8 418 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 OOEPA6NGQ2 149 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 LGALS8O00214 317 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 PHF1O43189 567 aaPredicted RBP9.28□□□□□ -0.92
LIG1-211ENST00000596457 AKR7A2O43488 359 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 RHBDL1O75783 438 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 INMTO95050 263 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 PTBP3O95758 552 aaKnown RBP9.28□□□□□ -0.92
LIG1-211ENST00000596457 SERPINA3P01011 423 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 ZNF12P17014 697 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 CCL1P22362 96 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 VHLP40337 213 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 CCR9P51686 369 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 DVL1P1P54792 670 aaPredicted RBP9.28□□□□□ -0.92
LIG1-211ENST00000596457 CR1LQ2VPA4 569 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 ZNF404Q494X3 552 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 ESCO2Q56NI9 601 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 C6orf141Q5SZD1 244 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 FDX2Q6P4F2 183 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 HAGHLQ6PII5 290 aaPredicted RBP9.28□□□□□ -0.92
LIG1-211ENST00000596457 OR5T2Q8NGG2 359 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 OR10AC1Q8NH08 325 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 OR5AK2Q8NH90 309 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 TSEN15Q8WW01 171 aaKnown RBP9.28□□□□□ -0.92
LIG1-211ENST00000596457 TMEM186Q96B77 213 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 SEH1LQ96EE3 360 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 C1orf159Q96HA4 380 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 CNBD2Q96M20 576 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 PDCD1LG2Q9BQ51 273 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 BEX2Q9BXY8 128 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 RASSF4Q9H2L5 321 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 SNTG1Q9NSN8 517 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 SCN3BQ9NY72 215 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 DNAJB11Q9UBS4 358 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 MIOXQ9UGB7 285 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 PSORS1C1Q9UIG5 152 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 HHLA2Q9UM44 414 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 SLC7A11Q9UPY5 501 aa9.28□□□□□ -0.92
LIG1-211ENST00000596457 PNMA8CA0A1B0GUJ8 204 aa9.27□□□□□ -0.93
LIG1-211ENST00000596457 OR5B21A6NL26 309 aa9.27□□□□□ -0.93
LIG1-211ENST00000596457 OR4C45A6NMZ5 311 aa9.27□□□□□ -0.93
LIG1-211ENST00000596457 SLC1A7O00341 560 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms