RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LGALS8O00214 317 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 NDUFA2O43678 99 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 SERPINA3P01011 423 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 GNAO1P09471 354 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 WNT2P09544 360 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 KIR3DL2P43630 455 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 GPM6AP51674 278 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 GBX2P52951 348 aaPredicted RBP12.59□□□□□ -0.39
UPF1-202ENST00000594243 RIPK1Q13546 671 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 ALKBH1Q13686 389 aaKnown RBP12.59□□□□□ -0.39
UPF1-202ENST00000594243 FAM201AQ5SY85 155 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 PLCXD3Q63HM9 321 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 TMEM42Q69YG0 159 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 SFRP4Q6FHJ7 346 aaPredicted RBP12.59□□□□□ -0.39
UPF1-202ENST00000594243 WDR82Q6UXN9 313 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 TMPRSS11AQ6ZMR5 421 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 DCDC5Q6ZRR9 648 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 NLRC3Q7RTR2 1065 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 GCSAMQ8N6F7 178 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 DEFB108BQ8NET1 73 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 HPSE2Q8WWQ2 592 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 RNF166Q96A37 237 aaPredicted RBP12.59□□□□□ -0.39
UPF1-202ENST00000594243 TMEM80Q96HE8 168 aa12.59□□□□□ -0.39
UPF1-202ENST00000594243 DIMT1Q9UNQ2 313 aaKnown RBP12.59□□□□□ -0.39
UPF1-202ENST00000594243 CAB39Q9Y376 341 aaPredicted RBP12.59□□□□□ -0.39
UPF1-202ENST00000594243 TLN2Q9Y4G6 2542 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 F5H0A9 414 aaPredicted RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 LIMS3P0CW19 117 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 LIMS4P0CW20 117 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 RPS2P15880 293 aaKnown RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 MYL12AP19105 171 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 GATA3P23771 443 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 NANOS3P60323 173 aaKnown RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 CSNK2BP67870 215 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 CR1LQ2VPA4 569 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 ESCO2Q56NI9 601 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 FAM120AOSQ5T036 256 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 RDH10Q8IZV5 341 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 SCCPDHQ8NBX0 429 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 C19orf18Q8NEA5 215 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 OR10Z1Q8NGY1 313 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 ZNF671Q8TAW3 534 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 FBLIM1Q8WUP2 373 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 LRRC29Q8WV35 223 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 GGHQ92820 318 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 RPL3LQ92901 407 aaKnown RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 NEIL1Q96FI4 390 aaPredicted RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 TECTBQ96PL2 329 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 OR51I2Q9H344 312 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 METTL17Q9H7H0 456 aaPredicted RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 PLCXD1Q9NUJ7 323 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 CNOT2Q9NZN8 540 aaKnown RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 LRCH1Q9Y2L9 728 aa12.58□□□□□ -0.4
UPF1-202ENST00000594243 EXOSC1Q9Y3B2 195 aaKnown RBP12.58□□□□□ -0.4
UPF1-202ENST00000594243 PPIAL4CA0A0B4J2A2 164 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 LOC107986453A0A1B0GWG9 222 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 EFCAB10A6NFE3 127 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 ANKRD61A6NGH8 418 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 A6NIN4 97 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 C3orf80F5H4A9 247 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 CCDC159P0C7I6 412 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 PIPP12273 146 aaPredicted RBP12.57□□□□□ -0.4
UPF1-202ENST00000594243 MUC1P15941 1255 aaPredicted RBP12.57□□□□□ -0.4
UPF1-202ENST00000594243 CD80P33681 288 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 TGM4P49221 684 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 AQP4P55087 323 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 GNB2P62879 340 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 LCN2P80188 198 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 MICBQ29980 383 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 TEX36Q5VZQ5 186 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 FAHD2BQ6P2I3 314 aaPredicted RBP12.57□□□□□ -0.4
UPF1-202ENST00000594243 ZNF573Q86YE8 665 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 ZNF676Q8N7Q3 588 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 BPIFB6Q8NFQ5 453 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 OR8B3Q8NGG8 313 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 PP6455Q8WZ26 134 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 FAHD2AQ96GK7 314 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 OR8B2Q96RD0 313 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 FGF23Q9GZV9 251 aaPredicted RBP12.57□□□□□ -0.4
UPF1-202ENST00000594243 COMMD4Q9H0A8 199 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 GPR173Q9NS66 373 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 HHLA2Q9UM44 414 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 SLC7A11Q9UPY5 501 aa12.57□□□□□ -0.4
UPF1-202ENST00000594243 POLR3KQ9Y2Y1 108 aaPredicted RBP12.57□□□□□ -0.4
UPF1-202ENST00000594243 A0A0G2JMP0 313 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 TRBV2A0A0J9YWF9 115 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 A0A0X1KG70 313 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 TMEM212A6NML5 194 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 OR4C45A6NMZ5 311 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 SRRM5B3KS81 715 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 H3BSH0 61 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 GATBO75879 557 aaKnown RBP12.56□□□□□ -0.4
UPF1-202ENST00000594243 ATP6V1G2O95670 118 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 NPY4RP50391 375 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 ETV1P50549 477 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 ST3GAL4Q11206 333 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 KRTAP21-3Q3LHN1 58 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 CCDC58Q4VC31 144 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 DMRTC1Q5HYR2 192 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 DCAF12L2Q5VW00 463 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms