RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 KRT8P05787 483 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 OR2T7P0C7T2 308 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 ATP6V1E1P36543 226 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 BPIFB3P59826 476 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 GMFBP60983 142 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 BAMBIQ13145 260 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 CEP78Q5JTW2 689 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 GPR157Q5UAW9 335 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 METTL11BQ5VVY1 283 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 C9orf139Q6ZV77 190 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 BTN2A1Q7KYR7 527 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 OR2T27Q8NH04 317 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 PPP1R14AQ96A00 147 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 SEH1LQ96EE3 360 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 PCGF1Q9BSM1 259 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 FGF23Q9GZV9 251 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-203ENST00000593582 ZMAT3Q9HA38 289 aaKnown RBP12.66□□□□□ -0.38
TRIM28-203ENST00000593582 IMPAD1Q9NX62 359 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 MRM2Q9UI43 246 aaKnown RBP12.66□□□□□ -0.38
TRIM28-203ENST00000593582 ENPP5Q9UJA9 477 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 OR52A1Q9UKL2 312 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 SNX5Q9Y5X3 404 aa12.66□□□□□ -0.38
TRIM28-203ENST00000593582 OR5B21A6NL26 309 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 P2RY10O00398 339 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 GPR37O15354 613 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 AKR7A2O43488 359 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 NDUFB3O43676 98 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 SRSF10O75494 262 aaKnown RBP12.65□□□□□ -0.38
TRIM28-203ENST00000593582 TTRP02766 147 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 ALPLP05186 524 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 FAHP16930 419 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 PRTN3P24158 256 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 TMED1Q13445 227 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 PLCXD3Q63HM9 321 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 STUMQ69YW2 141 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 PLEKHG7Q6ZR37 379 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 MOB3CQ70IA8 216 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 ELMOD2Q8IZ81 293 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 YIPF7Q8N8F6 280 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 OR10H4Q8NGA5 316 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 OR5T2Q8NGG2 359 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 OR5A2Q8NGI9 324 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 TRUB1Q8WWH5 349 aaKnown RBP12.65□□□□□ -0.38
TRIM28-203ENST00000593582 ZNF48Q96MX3 618 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-203ENST00000593582 WDFY2Q96P53 400 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 RAB3IPQ96QF0 476 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-203ENST00000593582 TBX5Q99593 518 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 DNTTIP1Q9H147 329 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 WDR13Q9H1Z4 485 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 OR51I2Q9H344 312 aa12.65□□□□□ -0.38
TRIM28-203ENST00000593582 DOCK11Q5JSL3 2073 aa12.65□□□□□ -0.39
TRIM28-203ENST00000593582 A0A1W2PQL4 384 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-203ENST00000593582 TMEM89A2RUT3 159 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 DNAJC9-AS1A6NH13 148 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 NKX6-3A6NJ46 265 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 H3BNX3 289 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 EBAG9O00559 213 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 RPP14O95059 124 aaKnown RBP12.64□□□□□ -0.39
TRIM28-203ENST00000593582 APOL3O95236 402 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 NRASP01111 189 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 SFTPBP07988 381 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 COMPP49747 757 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-203ENST00000593582 IKZF1Q13422 519 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 LRRC10Q5BKY1 277 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 ZNF684Q5T5D7 378 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 ATPAF1Q5TC12 328 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-203ENST00000593582 BRD3OSQ6XYD6 125 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 SSX6Q7RTT6 188 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 FAM216BQ8N7L0 139 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 ZNF671Q8TAW3 534 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 SLC25A28Q96A46 364 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 EME1Q96AY2 570 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 DUX5Q96PT3 197 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 CNTD2Q9H8S5 307 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 SNTG1Q9NSN8 517 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 USE1Q9NZ43 259 aa12.64□□□□□ -0.39
TRIM28-203ENST00000593582 RPUSD1Q9UJJ7 312 aaKnown RBP12.64□□□□□ -0.39
TRIM28-203ENST00000593582 A0A1B0GW55 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 METTL15A6NJ78 407 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DHRS7CA6NNS2 312 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 EI24O14681 340 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 FCN3O75636 299 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 RHBDL1O75783 438 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L2P0CJ85 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L3P0CJ86 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L4P0CJ87 422 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L5P0CJ88 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L6P0CJ89 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L7P0CJ90 424 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 MMP9P14780 707 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 GLRA1P23415 457 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 ALDH3A2P51648 485 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 ARF6P62330 175 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 ELF3P78545 371 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-203ENST00000593582 PDCD1Q15116 288 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DMRTC1Q5HYR2 192 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 CLVS2Q5SYC1 327 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 DUX4L9Q6RFH8 374 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-203ENST00000593582 MED30Q96HR3 178 aa12.63□□□□□ -0.39
TRIM28-203ENST00000593582 TBX15Q96SF7 602 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms