RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 PCGF1Q9BSM1 259 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 PPP1R3EQ9H7J1 279 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 ADGRL4Q9HBW9 690 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 GPR84Q9NQS5 396 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 NUFIP1Q9UHK0 495 aaKnown RBP10.28□□□□□ -0.76
SS18-225ENST00000585121 ENPP5Q9UJA9 477 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 NKX6-3A6NJ46 265 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 SRRM5B3KS81 715 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 P2RY10O00398 339 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 GPR37O15354 613 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 NDUFB3O43676 98 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 TOX4O94842 621 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 KRT8P05787 483 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 PRTN3P24158 256 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 GPM6AP51674 278 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 GMFBP60983 142 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 GNG3P63215 75 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 CEACAM21Q3KPI0 293 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 LRRC10Q5BKY1 277 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 OGFRL1Q5TC84 451 aaPredicted RBP10.28□□□□□ -0.76
SS18-225ENST00000585121 PLCXD3Q63HM9 321 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 C9orf139Q6ZV77 190 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 MOB3CQ70IA8 216 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 BTN2A1Q7KYR7 527 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 BCL6BQ8N143 479 aaPredicted RBP10.28□□□□□ -0.76
SS18-225ENST00000585121 SCCPDHQ8NBX0 429 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 OR5A2Q8NGI9 324 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 OR8J1Q8NGP2 316 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 ZNF671Q8TAW3 534 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 SLC25A28Q96A46 364 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 GABARAPL3Q9BY60 117 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 ESM1Q9NQ30 184 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 C8orf4Q9NR00 106 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 IMPAD1Q9NX62 359 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 PIGLQ9Y2B2 252 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 LRRC42Q9Y546 428 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 SNX5Q9Y5X3 404 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 R4GMQ9 66 aa10.28□□□□□ -0.76
SS18-225ENST00000585121 DOCK11Q5JSL3 2073 aa10.27□□□□□ -0.76
SS18-225ENST00000585121 TMEM89A2RUT3 159 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 OR5B21A6NL26 309 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 ZNF732B4DXR9 585 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 H0YJX3 145 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 DHRS3O75911 302 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 PLATP00750 562 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 OR2T7P0C7T2 308 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 HTR1FP30939 366 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 TMED1Q13445 227 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 PDCD1Q15116 288 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 FAM76BQ5HYJ3 339 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 WDR38Q5JTN6 314 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 CEP78Q5JTW2 689 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 ZNF684Q5T5D7 378 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 C3orf56Q8N813 242 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 YIPF7Q8N8F6 280 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 OR2T27Q8NH04 317 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 ZDHHC16Q969W1 377 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 MED30Q96HR3 178 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 WDFY2Q96P53 400 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 DNTTIP1Q9H147 329 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 CNTD2Q9H8S5 307 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 SMURF1Q9HCE7 757 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 OR52A1Q9UKL2 312 aa10.27□□□□□ -0.77
SS18-225ENST00000585121 DNAJC9-AS1A6NH13 148 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 PRR32B1ATL7 298 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 AKR7A2O43488 359 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 NRASP01111 189 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 GLRA1P23415 457 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 POLR2IP36954 125 aaKnown RBP10.26□□□□□ -0.77
SS18-225ENST00000585121 COMPP49747 757 aaPredicted RBP10.26□□□□□ -0.77
SS18-225ENST00000585121 MFGE8Q08431 387 aaPredicted RBP10.26□□□□□ -0.77
SS18-225ENST00000585121 IKZF1Q13422 519 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 CLVS2Q5SYC1 327 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 ATPAF1Q5TC12 328 aaPredicted RBP10.26□□□□□ -0.77
SS18-225ENST00000585121 KRT74Q7RTS7 529 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 ELMOD2Q8IZ81 293 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 CMTM4Q8IZR5 234 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 OR10H4Q8NGA5 316 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 TRUB1Q8WWH5 349 aaKnown RBP10.26□□□□□ -0.77
SS18-225ENST00000585121 HPSE2Q8WWQ2 592 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 GATAD2BQ8WXI9 593 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 TBX5Q99593 518 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 VCXQ9H320 206 aa10.26□□□□□ -0.77
SS18-225ENST00000585121 MRM2Q9UI43 246 aaKnown RBP10.26□□□□□ -0.77
SS18-225ENST00000585121 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.26□□□□□ -0.77
SS18-225ENST00000585121 METTL15A6NJ78 407 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 RPP14O95059 124 aaKnown RBP10.25□□□□□ -0.77
SS18-225ENST00000585121 IGLV3-1P01715 115 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 TTRP02766 147 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 FAHP16930 419 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 ARF6P62330 175 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 TUSC1Q2TAM9 212 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 LPCAT4Q643R3 524 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 STUMQ69YW2 141 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 BRD3OSQ6XYD6 125 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 ZNF573Q86YE8 665 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 PACRGLQ8N7B6 248 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 OR5T2Q8NGG2 359 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 PPP1R14AQ96A00 147 aa10.25□□□□□ -0.77
SS18-225ENST00000585121 EME1Q96AY2 570 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms