RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PAPOLBQ9NRJ5 636 aaKnown RBP12.51□□□□□ -0.41
VPS53-218ENST00000575207 SLAMF8Q9P0V8 285 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 KLK5Q9Y337 293 aaPredicted RBP12.51□□□□□ -0.41
VPS53-218ENST00000575207 ADAM18Q9Y3Q7 739 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 LRP1BQ9NZR2 4599 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 TRAV27A0A087WT01 109 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 GLRA1P23415 457 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 ARHGDIBP52566 201 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 PRR20EP86478 221 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 PRR20CP86479 221 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 PRR20DP86480 221 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 PRR20BP86481 221 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 PRR20AP86496 221 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 GABPB1Q06547 395 aaPredicted RBP12.5□□□□□ -0.41
VPS53-218ENST00000575207 THAP5Q7Z6K1 395 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 FOXRED2Q8IWF2 684 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 OR4P4Q8NGL7 312 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 OR1N2Q8NGR9 330 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 GTF2H4Q92759 462 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 RPL3LQ92901 407 aaKnown RBP12.5□□□□□ -0.41
VPS53-218ENST00000575207 APOPT1Q96IL0 206 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 Q96M85 177 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 C1orf21Q9H246 121 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 FAM53CQ9NYF3 392 aa12.5□□□□□ -0.41
VPS53-218ENST00000575207 ITM2AO43736 263 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 HOXB9P17482 250 aaPredicted RBP12.49□□□□□ -0.41
VPS53-218ENST00000575207 FASP25445 335 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 ACTA2P62736 377 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 ACTG2P63267 376 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 ACTC1P68032 377 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 ACTA1P68133 377 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 ZNF616Q08AN1 781 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 GPR50Q13585 617 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 AGBL2Q5U5Z8 902 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 LINC00322Q6ZN03 302 aaPredicted RBP12.49□□□□□ -0.41
VPS53-218ENST00000575207 MAVSQ7Z434 540 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 SLC35E3Q7Z769 313 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 ZDHHC23Q8IYP9 409 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 MICU2Q8IYU8 434 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 MAPKAPK5-AS1Q8N8E1 139 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 BPIFA2Q96DR5 249 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 MICU1Q9BPX6 476 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 GHITMQ9H3K2 345 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 YY1AP1Q9H869 796 aa12.49□□□□□ -0.41
VPS53-218ENST00000575207 IGHV2-26A0A0B4J1V2 119 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 ZNF728P0DKX0 622 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 PIPP12273 146 aaPredicted RBP12.48□□□□□ -0.41
VPS53-218ENST00000575207 CENPAP49450 140 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 RPL14P50914 215 aaKnown RBP12.48□□□□□ -0.41
VPS53-218ENST00000575207 SLC18B1Q6NT16 456 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 BLOC1S3Q6QNY0 202 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 LINC00346Q8IVM7 164 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 C5orf56Q8N8D9 126 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 SPTSSAQ969W0 71 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 ZNF570Q96NI8 536 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 NUAK2Q9H093 628 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 PNRC2Q9NPJ4 139 aaKnown RBP12.48□□□□□ -0.41
VPS53-218ENST00000575207 SLC25A37Q9NYZ2 338 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 DPM3Q9P2X0 92 aa12.48□□□□□ -0.41
VPS53-218ENST00000575207 I3L521 148 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 M0QX08 132 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 SLC22A2O15244 555 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 IFI30P13284 250 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 TAS2R41P59536 307 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 RUNX1Q01196 453 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 FHL1Q13642 323 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 ANKDD1AQ495B1 522 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 SMARCD3Q6STE5 483 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 OR6V1Q8N148 313 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 RTL8AQ9BWD3 113 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 GON7Q9BXV9 100 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 TUBA4BQ9H853 241 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 SP140LQ9H930 580 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 RAP2CQ9Y3L5 183 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 CEPT1Q9Y6K0 416 aa12.47□□□□□ -0.41
VPS53-218ENST00000575207 SMIM23A6NLE4 172 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 LINC01548A6NM66 108 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 SLC1A7O00341 560 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 DNAJC8O75937 253 aaPredicted RBP12.46□□□□□ -0.41
VPS53-218ENST00000575207 CD14P08571 375 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 MFGE8Q08431 387 aaPredicted RBP12.46□□□□□ -0.41
VPS53-218ENST00000575207 FAM76BQ5HYJ3 339 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 FAM122BQ7Z309 247 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 OAFQ86UD1 273 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 ZNF561Q8N587 486 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 OR2AJ1Q8NGZ0 328 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 MYOZ3Q8TDC0 251 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 DLX4Q92988 240 aaPredicted RBP12.46□□□□□ -0.41
VPS53-218ENST00000575207 PAPOLGQ9BWT3 736 aaKnown RBP12.46□□□□□ -0.41
VPS53-218ENST00000575207 NMNAT1Q9HAN9 279 aaPredicted RBP12.46□□□□□ -0.41
VPS53-218ENST00000575207 RIMS3Q9UJD0 308 aa12.46□□□□□ -0.41
VPS53-218ENST00000575207 SRRM2Q9UQ35 2752 aaKnown RBP12.45□□□□□ -0.42
VPS53-218ENST00000575207 HTR3EA5X5Y0 456 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 TMEM210A6NLX4 147 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 ANXA2P2A6NMY6 339 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 AP4M1O00189 453 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 FGF16O43320 207 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 MTRF1O75570 445 aaKnown RBP12.45□□□□□ -0.42
VPS53-218ENST00000575207 BPGMP07738 259 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 IDO1P14902 403 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms