RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 IQCF1Q8N6M8 205 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 TEX47Q8TBZ9 253 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 OR5P3Q8WZ94 311 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 RPL3LQ92901 407 aaKnown RBP12.23□□□□□ -0.45
CLN3-236ENST00000568558 TNFRSF14Q92956 283 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 GAFA1Q96PS6 74 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 NIPSNAP1Q9BPW8 284 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 FGF23Q9GZV9 251 aaPredicted RBP12.23□□□□□ -0.45
CLN3-236ENST00000568558 ABCB9Q9NP78 766 aa12.23□□□□□ -0.45
CLN3-236ENST00000568558 ZNF850A8MQ14 1090 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 FKBP6O75344 327 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 CST4P01036 141 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 CST1P01037 141 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 TFF1P04155 84 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 LYNP07948 512 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 SAA4P35542 130 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 TGFBR2P37173 567 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 DGUOKQ16854 277 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 FAM76BQ5HYJ3 339 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 CD300LDQ6UXZ3 194 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 C1orf122Q6ZSJ8 110 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 HS3ST5Q8IZT8 346 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 PNKDQ8N490 385 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 OR10G2Q8NGC3 310 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 OR5R1Q8NH85 324 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 OTOSQ8NHW6 89 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 ANGPTL6Q8NI99 470 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 HPSE2Q8WWQ2 592 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 OTULINQ96BN8 352 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 SLC25A10Q9UBX3 287 aaPredicted RBP12.22□□□□□ -0.45
CLN3-236ENST00000568558 ZNF391Q9UJN7 358 aa12.22□□□□□ -0.45
CLN3-236ENST00000568558 ZNF816-ZNF321PA0A0X1KG74 233 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 MEIOCA2RUB1 952 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 H3BN98 237 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 M0R1W7 72 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 AKR7A2O43488 359 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 ATP5HO75947 161 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 PAHP00439 452 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 DCTDP32321 178 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 UBE2E1P51965 193 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 CAV3P56539 151 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 PSMA6P60900 246 aaKnown RBP12.21□□□□□ -0.45
CLN3-236ENST00000568558 CBX1P83916 185 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 EGR3Q06889 387 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 KCTD8Q6ZWB6 473 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.21□□□□□ -0.45
CLN3-236ENST00000568558 PAPD5Q8NDF8 572 aaKnown RBP12.21□□□□□ -0.45
CLN3-236ENST00000568558 PIGCQ92535 297 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 MED30Q96HR3 178 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 RNF170Q96K19 258 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 LYZL4Q96KX0 146 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 OR51V1Q9H2C8 321 aa12.21□□□□□ -0.45
CLN3-236ENST00000568558 PLXNB1O43157 2135 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 A0A1W2PQ09 198 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 SIGLEC5O15389 551 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 SELENOFO60613 162 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 ACAA1P09110 424 aaPredicted RBP12.2□□□□□ -0.46
CLN3-236ENST00000568558 PAICSP22234 425 aaKnown RBP12.2□□□□□ -0.46
CLN3-236ENST00000568558 RASSF2P50749 326 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 ACSM1Q08AH1 577 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 C2orf68Q2NKX9 166 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 NCR3LG1Q68D85 454 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 ASRGL1Q7L266 308 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 ZDHHC23Q8IYP9 409 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 ZNF454Q8N9F8 522 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 OR8B12Q8NGG6 310 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 FAM110DQ8TAY7 271 aaPredicted RBP12.2□□□□□ -0.46
CLN3-236ENST00000568558 UTP4Q969X6 686 aaKnown RBP12.2□□□□□ -0.46
CLN3-236ENST00000568558 FEVQ99581 238 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 METTL8Q9H825 291 aaKnown RBP12.2□□□□□ -0.46
CLN3-236ENST00000568558 NLKQ9UBE8 527 aa12.2□□□□□ -0.46
CLN3-236ENST00000568558 ARRDC5A6NEK1 342 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 ANKRD61A6NGH8 418 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 OR2AT4A6NND4 320 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 PRR23D1E9PI22 279 aaPredicted RBP12.19□□□□□ -0.46
CLN3-236ENST00000568558 PRR23D2P0DMB1 279 aaPredicted RBP12.19□□□□□ -0.46
CLN3-236ENST00000568558 NDUFB7P17568 137 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 GLRA1P23415 457 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 GK3PQ14409 553 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 SLC35E4Q6ICL7 350 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 HCP5Q6MZN7 132 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 PLBD1Q6P4A8 553 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 C1QL4Q86Z23 238 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 BEND2Q8NDZ0 799 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 GIPC3Q8TF64 312 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 THEM6Q8WUY1 208 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 DUS3LQ96G46 650 aaKnown RBP12.19□□□□□ -0.46
CLN3-236ENST00000568558 PPA2Q9H2U2 334 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 NIPAL2Q9H841 368 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 ELL3Q9HB65 397 aaPredicted RBP12.19□□□□□ -0.46
CLN3-236ENST00000568558 FBLN5Q9UBX5 448 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 ZNF222Q9UK12 451 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 KLHDC2Q9Y2U9 406 aa12.19□□□□□ -0.46
CLN3-236ENST00000568558 DSCAML1Q8TD84 2053 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 IGKV1D-17A0A075B6S4 117 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 GNGT2O14610 69 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 PRODHO43272 600 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 RHBDL1O75783 438 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 PRKACGP22612 351 aa12.18□□□□□ -0.46
CLN3-236ENST00000568558 GABRA2P47869 451 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms