RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FAM81AQ8TBF8 368 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 LYZL4Q96KX0 146 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 SIRT7Q9NRC8 400 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 ZNRD1Q9P1U0 126 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 SLC25A10Q9UBX3 287 aaPredicted RBP15.38■□□□□ 0.05
CLN3-218ENST00000565688 LAMP5Q9UJQ1 280 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 LRP12Q9Y561 859 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 A0A0U1RQV5 110 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 ZNF816-ZNF321PA0A0X1KG74 233 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 RNASEK-C17orf49H0YIS7 233 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 M0R1W7 72 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 NPFFO15130 113 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 SIGLEC5O15389 551 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 AKR7A2O43488 359 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 FAM107AO95990 144 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 ACAA1P09110 424 aaPredicted RBP15.37■□□□□ 0.05
CLN3-218ENST00000565688 T-ENOLP0DO92 83 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 ALOX5APP20292 161 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 DCTDP32321 178 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 MAP2K3P46734 347 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 CAV3P56539 151 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 RPS7P62081 194 aaKnown RBP15.37■□□□□ 0.05
CLN3-218ENST00000565688 MIDNQ504T8 468 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 NCR3LG1Q68D85 454 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 KCTD18Q6PI47 426 aaPredicted RBP15.37■□□□□ 0.05
CLN3-218ENST00000565688 DEGS2Q6QHC5 323 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 KRT74Q7RTS7 529 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 KRT77Q7Z794 578 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 TMEM179BQ7Z7N9 219 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 Q8N7P7 452 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 ZSCAN4Q8NAM6 433 aaPredicted RBP15.37■□□□□ 0.05
CLN3-218ENST00000565688 CANT1Q8WVQ1 401 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 HPSE2Q8WWQ2 592 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 CLPTM1LQ96KA5 538 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 GAFA1Q96PS6 74 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 YIPF3Q9GZM5 350 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 MMP27Q9H306 513 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 METTL8Q9H825 291 aaKnown RBP15.37■□□□□ 0.05
CLN3-218ENST00000565688 YY1AP1Q9H869 796 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 TAS2R1Q9NYW7 299 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 NLKQ9UBE8 527 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 VPREB3Q9UKI3 123 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 KLHDC2Q9Y2U9 406 aa15.37■□□□□ 0.05
CLN3-218ENST00000565688 OR2AT4A6NND4 320 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 PAHP00439 452 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 ANXA8P13928 327 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 SELLP14151 372 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 ATP6V1B1P15313 513 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 GPM6AP51674 278 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 UBE2E1P51965 193 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 PROK1P58294 105 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 GNG3P63215 75 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 BLMHQ13867 455 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 DHRS7BQ6IAN0 325 aaPredicted RBP15.36■□□□□ 0.05
CLN3-218ENST00000565688 OR5R1Q8NH85 324 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 THTPAQ9BU02 230 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 C16orf95Q9H693 158 aa15.36■□□□□ 0.05
CLN3-218ENST00000565688 A0A1W2PQ09 198 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 NDUFB7P17568 137 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 SLC2A5P22732 501 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 GLRA1P23415 457 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 TGFBR2P37173 567 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 ACSM1Q08AH1 577 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 TAF9Q16594 264 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 DGUOKQ16854 277 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 CEACAM21Q3KPI0 293 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 ZNF671Q8TAW3 534 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 TNFRSF14Q92956 283 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 MROQ9BYG7 248 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 FGF23Q9GZV9 251 aaPredicted RBP15.35■□□□□ 0.05
CLN3-218ENST00000565688 SEMA6AQ9H2E6 1030 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 OR51I2Q9H344 312 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 SLC25A19Q9HC21 320 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 WNK1Q9H4A3 2382 aa15.35■□□□□ 0.05
CLN3-218ENST00000565688 TRBV23-1A0A0A0MS06 115 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 TMEM269A0A1B0GVZ9 245 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 MEIOCA2RUB1 952 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 OR5B21A6NL26 309 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 ZNF732B4DXR9 585 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 SAA4P35542 130 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 GABRA2P47869 451 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 KRTAP10-3P60369 221 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 APOFQ13790 326 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 Q6ZSV7 163 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 THAP5Q7Z6K1 395 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 BBS1Q8NFJ9 593 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 OR5A2Q8NGI9 324 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 DNAJC9Q8WXX5 260 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 UBE2FQ969M7 185 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 RBM4BQ9BQ04 359 aaKnown RBP15.34■□□□□ 0.05
CLN3-218ENST00000565688 TCF7L1Q9HCS4 588 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 FAM206AQ9NX38 181 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 TMEM14AQ9Y6G1 99 aa15.34■□□□□ 0.05
CLN3-218ENST00000565688 GSC2O15499 205 aa15.33■□□□□ 0.04
CLN3-218ENST00000565688 ZNF254O75437 659 aa15.33■□□□□ 0.04
CLN3-218ENST00000565688 RHBDL1O75783 438 aa15.33■□□□□ 0.04
CLN3-218ENST00000565688 TSPAN9O75954 239 aa15.33■□□□□ 0.04
CLN3-218ENST00000565688 ROM1Q03395 351 aa15.33■□□□□ 0.04
CLN3-218ENST00000565688 RIPPLY1Q0D2K3 151 aa15.33■□□□□ 0.04
CLN3-218ENST00000565688 KLRD1Q13241 179 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms