RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 BAALCQ8WXS3 180 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ART4Q93070 314 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SCRN2Q96FV2 425 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SDSLQ96GA7 329 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 URB1-AS1Q96HZ7 61 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SLC35G5Q96KT7 338 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 TSSK2Q96PF2 358 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 P2RX4Q99571 388 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 S100A13Q99584 98 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 MEIS3Q99687 375 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 GINS3Q9BRX5 216 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 LINC00470Q9BZP3 86 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ACTR3CQ9C0K3 210 aaPredicted RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 TMEM126AQ9H061 195 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 TKTL2Q9H0I9 626 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SLC25A51Q9H1U9 297 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ZDHHC11Q9H8X9 412 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 RDH14Q9HBH5 336 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 C3orf14Q9HBI5 128 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ENY2Q9NPA8 101 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 SMCO4Q9NRQ5 59 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 UBQLN4Q9NRR5 601 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 GPATCH2LQ9NWQ4 482 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 B3GAT1Q9P2W7 334 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 THAP10Q9P2Z0 257 aaPredicted RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 OPTCQ9UBM4 332 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 ZNF107Q9UII5 783 aaPredicted RBP4.39□□□□□ -1.71
VPS35-205ENST00000563984 DENND4AQ7Z401 1863 aa4.39□□□□□ -1.71
VPS35-205ENST00000563984 PTPRKQ15262 1439 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 NEO1Q92859 1461 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 CENPVL3A0A0U1RRI6 287 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 A0A1B0GUS0 222 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TCRBV7S3A2A0A539 114 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TVP23AA6NH52 213 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 YJEFN3A6XGL0 299 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 A8MVM7 634 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TRIM49D1C9J1S8 452 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 MS4A18H0YCH9 400 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PHOX2AO14813 284 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 RBFOX2O43251 390 aaKnown RBP eCLIP4.38□□□□□ -1.71
VPS35-205ENST00000563984 PRKAB2O43741 272 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ICOSLGO75144 302 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 RDH16O75452 317 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 GLUD1P00367 558 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 GCGP01275 180 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 AMBPP02760 352 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 GAPDHP04406 335 aaKnown RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 HIST1H2ABP04908 130 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 SMIM17P0DL12 118 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 LYL1P12980 280 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 UNGP13051 313 aaPredicted RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 AZU1P20160 251 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 HIST1H2ADP20671 130 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PRKACGP22612 351 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 FASP25445 335 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TNFSF8P32971 234 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 RPL21P46778 160 aaKnown RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 CX3CR1P49238 355 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 MTCP1P56278 107 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 RIPPLY3P57055 190 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TAS2R30P59541 319 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PRKCDQ05655 676 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF154Q13106 437 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 OR2F1Q13607 317 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 GNMTQ14749 295 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 JOSD1Q15040 202 aaPredicted RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 RNPS1Q15287 305 aaKnown RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF77Q15935 545 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF404Q494X3 552 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 LINC01620Q4KN68 170 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 MORN2Q502X0 79 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 VWA2Q5GFL6 755 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 CLEC12AQ5QGZ9 265 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TMEM78Q5T7P6 136 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 AADACL2Q6P093 401 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ENPP6Q6UWR7 440 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PLXDC2Q6UX71 529 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 CEACAM20Q6UY09 585 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 Q6ZTK2 550 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 HIST3H2AQ7L7L0 130 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PRSS48Q7RTY5 328 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF676Q8N7Q3 588 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF611Q8N823 705 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 YIPF7Q8N8F6 280 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 OR10V1Q8NGI7 309 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 OR5A2Q8NGI9 324 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 OR10G4Q8NGN3 311 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 THAP6Q8TBB0 222 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 SPPL2BQ8TCT7 592 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ACER1Q8TDN7 264 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 GPR119Q8TDV5 335 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF431Q8TF32 576 aaPredicted RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 PELI1Q96FA3 418 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 SLC35E1Q96K37 410 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 DNAJC30Q96LL9 226 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 GPR82Q96P67 336 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 RCHY1Q96PM5 261 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 DUX3Q96PT4 197 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 F2RL3Q96RI0 385 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 MBOAT4Q96T53 435 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms