RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OR6S1Q8NH40 331 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 OR51H1Q8NH63 302 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 PP6455Q8WZ26 134 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 FN3KRPQ9HA64 309 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 RAB9BQ9NP90 201 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 MEMO1Q9Y316 297 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 UGT2A1Q9Y4X1 527 aa8.09□□□□□ -1.11
VPS39-205ENST00000562258 FREM1Q5H8C1 2179 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 A0A1W2PNV4 684 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 K7EM74 188 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 RAF1P04049 648 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 PGA4P0DJD7 388 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 PGA3P0DJD8 388 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 RPS2P15880 293 aaKnown RBP8.08□□□□□ -1.12
VPS39-205ENST00000562258 COX7A1P24310 79 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 CEBPGP53567 150 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 ATP5J2P56134 94 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 MFGE8Q08431 387 aaPredicted RBP8.08□□□□□ -1.12
VPS39-205ENST00000562258 DOC2BQ14184 412 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 HNF4GQ14541 408 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 GRK1Q15835 563 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 PHLDA2Q53GA4 152 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DPPA2Q7Z7J5 298 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 LRRC28Q86X40 367 aaPredicted RBP8.08□□□□□ -1.12
VPS39-205ENST00000562258 OR52N4Q8NGI2 321 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 ONECUT1Q9UBC0 465 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 RAB22AQ9UL26 194 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 TRAV39A0A0B4J263 110 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 F5H5P2 479 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 PMP2P02689 132 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 PRH1P02810 166 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 HPNP05981 417 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 HOXB5P09067 269 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 GIFP27352 417 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 GSK3AP49840 483 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 UCP2P55851 309 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 ERVK-16P61578 105 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 TPBGQ13641 420 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 BCL2A1Q16548 175 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 SLC25A35Q3KQZ1 300 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 AVPI1Q5T686 147 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DEGS2Q6QHC5 323 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 ZCCHC24Q8N2G6 241 aaKnown RBP8.08□□□□□ -1.12
VPS39-205ENST00000562258 RFLNBQ8N5W9 214 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 OR51A2Q8NGJ7 313 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 RAB40AQ8WXH6 277 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 PPP1R14BQ96C90 147 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 TAAR6Q96RI8 345 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 SFXN3Q9BWM7 321 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 OR2S2Q9NQN1 319 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 KIF25Q9UIL4 384 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 KLHDC2Q9Y2U9 406 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 A3GALT2U3KPV4 340 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 A0A1B0GW55 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 OR5H1A6NKK0 313 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 SSX4O60224 188 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 OR4A8P0C604 315 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4L2P0CJ85 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4L3P0CJ86 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4L4P0CJ87 422 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4L5P0CJ88 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4L6P0CJ89 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4L7P0CJ90 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 LHX2P50458 406 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 FOXG1P55316 489 aaPredicted RBP8.08□□□□□ -1.12
VPS39-205ENST00000562258 SLC9A3R2Q15599 337 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 CCBE1Q6UXH8 406 aaPredicted RBP8.08□□□□□ -1.12
VPS39-205ENST00000562258 DBX2Q6ZNG2 339 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 LHFPL2Q6ZUX7 228 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 ZNF695Q8IW36 515 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 C17orf78Q8N4C9 275 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 DUX4Q9UBX2 424 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 MALRD1Q5VYJ5 2156 aa8.08□□□□□ -1.12
VPS39-205ENST00000562258 H7C417 338 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 H2AFB2P0C5Z0 115 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 GNB3P16520 340 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 PVALBP20472 110 aaPredicted RBP8.07□□□□□ -1.12
VPS39-205ENST00000562258 SRP14P37108 136 aaKnown RBP8.07□□□□□ -1.12
VPS39-205ENST00000562258 CLDN18P56856 261 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 BEX5Q5H9J7 111 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 Q6ZS92 163 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 AKAP14Q86UN6 197 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 SPERTQ8NA61 448 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ZNF488Q96MN9 340 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 RGCCQ9H4X1 137 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 HRASLSQ9HDD0 168 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 RNF115Q9Y4L5 304 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 A0A1W2PNU3 283 aaPredicted RBP8.07□□□□□ -1.12
VPS39-205ENST00000562258 IFITM5A6NNB3 132 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 DEFB108AA8MXU0 73 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ARPC1BO15143 372 aaKnown RBP8.07□□□□□ -1.12
VPS39-205ENST00000562258 EFNA2O43921 213 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 PI3P19957 117 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 UGT2B10P36537 528 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 LIMS1P48059 325 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ZNF85Q03923 595 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 FOXO1Q12778 655 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ZFP69Q49AA0 526 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 ZNF826PQ6ZT77 177 aa8.07□□□□□ -1.12
VPS39-205ENST00000562258 Q6ZT83 130 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms