RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 FAIMQ9NVQ4 179 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 TAS2R4Q9NYW5 299 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 TAAR3PQ9P1P4 343 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 FBLN5Q9UBX5 448 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 IL19Q9UHD0 177 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 POU2F3Q9UKI9 436 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 A3GALT2U3KPV4 340 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 V9GY05 133 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 DYSFO75923 2080 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 LOC100506127A0A0U1RQW1 187 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 ANXA2P2A6NMY6 339 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF850A8MQ14 1090 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 NOTOA8MTQ0 251 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 OVOL3O00110 214 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 SLC17A2O00624 439 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 NOS1APO75052 506 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 FSTL3O95633 263 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 PAX1P15863 534 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 AZGP1P25311 298 aaKnown RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 RBP2P50120 134 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 CAPZA1P52907 286 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 ZP1P60852 638 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 GNG3P63215 75 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 MAB21L1Q13394 359 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 SPCS2Q15005 226 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF181Q2M3W8 571 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 AGAP6Q5VW22 663 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 GLT8D1Q68CQ7 371 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 TMEM200AQ86VY9 491 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 SAXO1Q8IYX7 474 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 FBXL14Q8N1E6 418 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 PXT1Q8NFP0 134 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 KCTD12Q96CX2 325 aaKnown RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 ORAI1Q96D31 301 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 CPNE2Q96FN4 548 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 PAPOLGQ9BWT3 736 aaKnown RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 PKIBQ9C010 78 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 NXF2Q9GZY0 626 aaKnown RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 DCSTAMPQ9H295 470 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 CXXC4Q9H2H0 198 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 OR51I2Q9H344 312 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 GHRLQ9UBU3 117 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 PLEKHB1Q9UF11 243 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 DUSP13Q9UII6 198 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 SLC7A11Q9UPY5 501 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 CACNA1DQ01668 2161 aa8.14□□□□□ -1.11
LIMA1-211ENST00000552338 HELZ2Q9BYK8 2649 aaKnown RBP8.14□□□□□ -1.11
LIMA1-211ENST00000552338 IGKV1-27A0A075B6S5 117 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-211ENST00000552338 LOC100289279A0A1B0GTE1 492 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 A0A1W2PPK0 400 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 PLSCR5A0PG75 271 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 LRP5LA4QPB2 252 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 ZSCAN5BA6NJL1 495 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 IFITM5A6NNB3 132 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 H7C417 338 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 M0R233 179 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 AIPO00170 330 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 MAGEB3O15480 346 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 NOL3O60936 208 aaKnown RBP8.13□□□□□ -1.11
LIMA1-211ENST00000552338 CDRT1O95170 752 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 IGHV1-46P01743 117 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 CA6P23280 308 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 SSTR2P30874 369 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 TGFBR1P36897 503 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF81P51508 661 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 ATP1B3P54709 279 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 PRSS12P56730 875 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 MRPS11P82912 194 aaKnown RBP8.13□□□□□ -1.11
LIMA1-211ENST00000552338 IL24Q13007 206 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 KISS1Q15726 138 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 PCGF3Q3KNV8 242 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 VHLLQ6RSH7 139 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 LINC00299Q6ZSB3 139 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 MOB3CQ70IA8 216 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF573Q86YE8 665 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 C11orf53Q8IXP5 236 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 OR52N4Q8NGI2 321 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 OR13C9Q8NGT0 318 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 Q8TCH9 128 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 SLC25A28Q96A46 364 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 PTX4Q96A99 478 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 BORCS8Q96FH0 119 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 CMTM3Q96MX0 182 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 SORCS2Q96PQ0 1159 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 HIST1H2AAQ96QV6 131 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 MICU1Q9BPX6 476 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 SYT3Q9BQG1 590 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 RTL8AQ9BWD3 113 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 BARHL1Q9BZE3 327 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 TPK1Q9H3S4 243 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 PPP1R3EQ9H7J1 279 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 SEBOXQ9HB31 216 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-211ENST00000552338 GPR173Q9NS66 373 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 C14orf119Q9NWQ9 140 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 IL36GQ9NZH8 169 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 CCDC59Q9P031 241 aaKnown RBP8.13□□□□□ -1.11
LIMA1-211ENST00000552338 LRRK2Q5S007 2527 aa8.13□□□□□ -1.11
LIMA1-211ENST00000552338 USP9YO00507 2555 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-211ENST00000552338 A0A075B6Q4 140 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms