RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ELL3Q9HB65 397 aaPredicted RBP9.38□□□□□ -0.91
CLSTN3-209ENST00000539982 CENPMQ9NSP4 180 aa9.38□□□□□ -0.91
CLSTN3-209ENST00000539982 PITPNC1Q9UKF7 332 aa9.38□□□□□ -0.91
CLSTN3-209ENST00000539982 RHBDD3Q9Y3P4 386 aa9.38□□□□□ -0.91
CLSTN3-209ENST00000539982 FAM32AQ9Y421 112 aaKnown RBP9.38□□□□□ -0.91
CLSTN3-209ENST00000539982 TRBV4-1A0A0J9YWV2 114 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 TVP23AA6NH52 213 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 FAM90A8PA6NJQ4 464 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 ANXA2P2A6NMY6 339 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 CXCR6O00574 342 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 AKR7A2O43488 359 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 PF4P02776 101 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 ALDOBP05062 364 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 GABRA2P47869 451 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 PSME3P61289 254 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 BLCAPP62952 87 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 TIGD6Q17RP2 521 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 ARSJQ5FYB0 599 aaPredicted RBP9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 FAM76BQ5HYJ3 339 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 C8orf82Q6P1X6 216 aaPredicted RBP9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 Q6ZS46 218 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 C11orf42Q8N5U0 333 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNRF1Q8ND25 227 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 CSNK2A3Q8NEV1 391 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 SDR9C7Q8NEX9 313 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 FANK1Q8TC84 345 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 RPL3LQ92901 407 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 UTP4Q969X6 686 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 REEP6Q96HR9 211 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 RTL8AQ9BWD3 113 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 PAPOLGQ9BWT3 736 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 SP140LQ9H930 580 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 CMTM6Q9NX76 183 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 GMPR2Q9P2T1 348 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 NLKQ9UBE8 527 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 AP3M1Q9Y2T2 418 aa9.37□□□□□ -0.91
CLSTN3-209ENST00000539982 IGKV1D-17A0A075B6S4 117 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 hCG_38984A0A1B0GV85 526 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 hCG_1809904A0A1W2PP81 198 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 A0A1W2PPE2 198 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 A0A1W2PPH5 198 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 A0A1W2PR64 198 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 A0A1W2PRV1 198 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 TMEM210A6NLX4 147 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 GSTA4O15217 222 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 RHBDL1O75783 438 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 SERPINA1P01009 418 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 NHLRC4P0CG21 123 aaPredicted RBP9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 RHCEP18577 417 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 CFL1P23528 166 aaKnown RBP9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 HOXD3P31249 432 aaPredicted RBP9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 PYCR1P32322 319 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 VDAC2P45880 294 aaPredicted RBP9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 SLC15A1P46059 708 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 GSK3AP49840 483 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 DCTN2Q13561 401 aaKnown RBP9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 SNCBQ16143 134 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 SLC35F1Q5T1Q4 408 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 ARPINQ7Z6K5 226 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 LHFPL4Q7Z7J7 247 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 TMEM219Q86XT9 240 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 DYNAPQ8N1N2 210 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 FTMTQ8N4E7 242 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 TMEM185AQ8NFB2 350 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 PROKR2Q8NFJ6 384 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 OR52J3Q8NH60 311 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 RPS4Y2Q8TD47 263 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNRF4Q8WWF5 429 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 MALSU1Q96EH3 234 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 CDRT15Q96T59 188 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 FUZQ9BT04 418 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 MUC13Q9H3R2 512 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 SPAG4Q9NPE6 437 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 ABCB10Q9NRK6 738 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 INPP5EQ9NRR6 644 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 C19orf12Q9NSK7 152 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 NDUFAF4Q9P032 175 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 LRP12Q9Y561 859 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 MPC1Q9Y5U8 109 aa9.36□□□□□ -0.91
CLSTN3-209ENST00000539982 TCRBV4S1A1TA0A5B7 111 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 ZNF878C9JN71 531 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 H0YHG0 523 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 C3orf84H3BNL1 204 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 F2RL2O00254 374 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 SYNGR1O43759 233 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 CIB2O75838 187 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 ANXA2P07355 339 aaKnown RBP9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 SPARCP09486 303 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 PSG2P11465 335 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 PSKH1P11801 424 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 GLRA1P23415 457 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 COX7A1P24310 79 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 CX3CR1P49238 355 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 SLC25A1P53007 311 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 GRB2P62993 217 aaKnown RBP9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 LIPEQ05469 1076 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 KLHL12Q53G59 568 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 PLA1AQ53H76 456 aa9.35□□□□□ -0.91
CLSTN3-209ENST00000539982 TCTEX1D4Q5JR98 221 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms