RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ZFP36P26651 326 aaKnown RBP16.62■□□□□ 0.25
CPSF1-209ENST00000532725 CLVS2Q5SYC1 327 aa16.62■□□□□ 0.25
CPSF1-209ENST00000532725 SFRP4Q6FHJ7 346 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-209ENST00000532725 GLCCI1Q86VQ1 547 aa16.62■□□□□ 0.25
CPSF1-209ENST00000532725 SCCPDHQ8NBX0 429 aa16.62■□□□□ 0.25
CPSF1-209ENST00000532725 CCDC54Q8NEL0 328 aa16.62■□□□□ 0.25
CPSF1-209ENST00000532725 DEFB108BQ8NET1 73 aa16.62■□□□□ 0.25
CPSF1-209ENST00000532725 GGHQ92820 318 aa16.62■□□□□ 0.25
CPSF1-209ENST00000532725 RPL3LQ92901 407 aaKnown RBP16.62■□□□□ 0.25
CPSF1-209ENST00000532725 ARHGAP32A7KAX9 2087 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 TRAV20A0A0B4J274 112 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 ZNF732B4DXR9 585 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 LGALS8O00214 317 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 ISG15P05161 165 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 ETV1P50549 477 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 GPM6AP51674 278 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 AQP4P55087 323 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 SEC61A1P61619 476 aaKnown RBP16.61■□□□□ 0.25
CPSF1-209ENST00000532725 GNG3P63215 75 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 RIPK1Q13546 671 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 ALKBH1Q13686 389 aaKnown RBP16.61■□□□□ 0.25
CPSF1-209ENST00000532725 CR1LQ2VPA4 569 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 FAM120AOSQ5T036 256 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 TMEM244Q5VVB8 128 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 BOLLQ8N9W6 283 aaKnown RBP16.61■□□□□ 0.25
CPSF1-209ENST00000532725 OR51I2Q9H344 312 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 MIOXQ9UGB7 285 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 CDC42EP3Q9UKI2 254 aa16.61■□□□□ 0.25
CPSF1-209ENST00000532725 POLR3KQ9Y2Y1 108 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-209ENST00000532725 WNK2Q9Y3S1 2297 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 hCG_1807616A0A1W2PRN6 198 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 IRGMA1A4Y4 181 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 OR4C45A6NMZ5 311 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 E9PI62 339 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 H3BSH0 61 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 UBCP0CG48 685 aaKnown RBP16.6■□□□□ 0.25
CPSF1-209ENST00000532725 EGR1P18146 543 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 CHRFAM7AQ494W8 412 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 LYPD2Q6UXB3 125 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 DCDC5Q6ZRR9 648 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 KCTD8Q6ZWB6 473 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 LRRC29Q8WV35 223 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 BEX2Q9BXY8 128 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 GPR173Q9NS66 373 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 PLCXD1Q9NUJ7 323 aa16.6■□□□□ 0.25
CPSF1-209ENST00000532725 DIMT1Q9UNQ2 313 aaKnown RBP16.6■□□□□ 0.25
CPSF1-209ENST00000532725 TRAV38-1A0A0B4J264 116 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 LOC107986453A0A1B0GWG9 222 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 OOEPA6NGQ2 149 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 OR5B21A6NL26 309 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 C3orf80F5H4A9 247 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-209ENST00000532725 FOXH1O75593 365 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 CD80P33681 288 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 LCN2P80188 198 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 MRPL28Q13084 256 aaKnown RBP16.59■□□□□ 0.25
CPSF1-209ENST00000532725 TEX36Q5VZQ5 186 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 PLCXD3Q63HM9 321 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 OR10Z1Q8NGY1 313 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 TMEM80Q96HE8 168 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 SHARPINQ9H0F6 387 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 LPAR3Q9UBY5 353 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 PSORS1C1Q9UIG5 152 aa16.59■□□□□ 0.25
CPSF1-209ENST00000532725 CAB39Q9Y376 341 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-209ENST00000532725 KIAA1324LA8MWY0 1029 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-209ENST00000532725 A8MXK9 166 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 SRRM5B3KS81 715 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 XPNPEP2O43895 674 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF12P17014 697 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 ST3GAL4Q11206 333 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 KCNJ8Q15842 424 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 ZNF841Q6ZN19 808 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 FAM90A1Q86YD7 464 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 C10orf35Q96D05 121 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 NEIL1Q96FI4 390 aaPredicted RBP16.58■□□□□ 0.24
CPSF1-209ENST00000532725 TRIM36Q9NQ86 728 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 CLEC2DQ9UHP7 191 aa16.58■□□□□ 0.24
CPSF1-209ENST00000532725 PPIAL4CA0A0B4J2A2 164 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 PQLC2LA1A4F0 135 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 ANKRD61A6NGH8 418 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 TRAPPC2LH3BP13 241 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 NDUFA2O43678 99 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 RHBDL1O75783 438 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 ATP6V1G2O95670 118 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 PIPP12273 146 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 RPS2P15880 293 aaKnown RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 PCMT1P22061 227 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 TGM4P49221 684 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 GTF2A1P52655 376 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 GBX2P52951 348 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 UBE2V2Q15819 145 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 ESCO2Q56NI9 601 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 OR2G6Q5TZ20 316 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 FAHD2BQ6P2I3 314 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-209ENST00000532725 OR10AC1Q8NH08 325 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 HAVCR2Q8TDQ0 301 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 AQP3Q92482 292 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 SEH1LQ96EE3 360 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 FAHD2AQ96GK7 314 aa16.57■□□□□ 0.24
CPSF1-209ENST00000532725 VCX3BQ9H321 246 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms