RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PHYHD1Q5SRE7 291 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 HES5Q5TA89 166 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 ZNF770Q6IQ21 691 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-207ENST00000507401 CLEC2AQ6UVW9 174 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 HIST3H2AQ7L7L0 130 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 LSRQ86X29 649 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-207ENST00000507401 RBM45Q8IUH3 476 aaKnown RBP6.93□□□□□ -1.3
SCN1A-207ENST00000507401 KLHL36Q8N4N3 616 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 ARIH2OSQ8N7S6 290 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 AQP11Q8NBQ7 271 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 OR11H7Q8NGC8 314 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 OR4D11Q8NGI4 311 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 OR6X1Q8NH79 312 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 MOSPD2Q8NHP6 518 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 NSMAFQ92636 917 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 HIST1H2ACQ93077 130 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 LINC00052Q96N35 136 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 GAL3ST1Q99999 423 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 EMC6Q9BV81 110 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 NKX6-2Q9C056 277 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-207ENST00000507401 ZNF442Q9H7R0 627 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 PLEKHA1Q9HB21 404 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 SLCO1C1Q9NYB5 712 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 EXTL2Q9UBQ6 330 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 SLC7A7Q9UM01 511 aa6.93□□□□□ -1.3
SCN1A-207ENST00000507401 SF3B6Q9Y3B4 125 aaKnown RBP6.93□□□□□ -1.3
SCN1A-207ENST00000507401 ARFGEF3Q5TH69 2177 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 JMJD1CQ15652 2540 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 INAFM1C9JVW0 142 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 H3BUI4 141 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 DNASE2O00115 360 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 NDUFS8O00217 210 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 HPGDSO60760 199 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 CRLF1O75462 422 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 CH25HO95992 272 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SERPINA3P01011 423 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 OR4A8P0C604 315 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 ASAH2BP0C7U1 165 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 FOLR2P14207 255 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SEC61A1P61619 476 aaKnown RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 HGFACQ04756 655 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 ADIPOQQ15848 244 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 NRN1LQ496H8 165 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 FDX2Q6P4F2 183 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 WDR88Q6ZMY6 472 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SLC35D2Q76EJ3 337 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 DPPA2Q7Z7J5 298 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 C12orf45Q8N5I9 185 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SYT14Q8NB59 555 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 OR52I1Q8NGK6 324 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 OR6N1Q8NGY5 312 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 C10orf105Q8TEF2 133 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 LIPHQ8WWY8 451 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 FAM168AQ92567 244 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 TMEM54Q969K7 222 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 FBXO17Q96EF6 278 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SLC25A44Q96H78 314 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 TNFRSF13CQ96RJ3 184 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 MNTQ99583 582 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 PRSS27Q9BQR3 290 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 KRTAP9-9Q9BYP9 154 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 KRTAP9-4Q9BYQ2 154 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 PLK3Q9H4B4 646 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SAV1Q9H4B6 383 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 MYOZ1Q9NP98 299 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 TMEM138Q9NPI0 162 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 MEPEQ9NQ76 525 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 MED29Q9NX70 200 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 DCAF16Q9NXF7 216 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 SPATA2Q9UM82 520 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 MRPS7Q9Y2R9 242 aaKnown RBP6.92□□□□□ -1.3
SCN1A-207ENST00000507401 ABCA1O95477 2261 aa6.92□□□□□ -1.3
SCN1A-207ENST00000507401 CR1P17927 2039 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 IGHV4-30-2A0A087WSY4 118 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 A0A096LNT2 108 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 IGHV2OR16-5A0A0B4J2B6 119 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 A0A0D9SG52 128 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 LOC390937A0A1W2PQ73 354 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 A0A1W2PRQ8 180 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 UBE2QL1A1L167 161 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 VWC2LB2RUY7 222 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 MCRIP1C9JLW8 97 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 RNF13O43567 381 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 CREBL2O60519 120 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-207ENST00000507401 TFP02787 698 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 ZNF35P13682 527 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 RPA2P15927 270 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 FUT1P19526 365 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 FAUP35544 74 aaKnown RBP6.91□□□□□ -1.3
SCN1A-207ENST00000507401 MTNR1AP48039 350 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 CSNK1A1P48729 337 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 PPOXP50336 477 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 IDH3GP51553 393 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-207ENST00000507401 BIDP55957 195 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 TAS2R41P59536 307 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 CD81P60033 236 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 RAB4BP61018 213 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 RAB5BP61020 215 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 RAB1AP62820 205 aa6.91□□□□□ -1.3
SCN1A-207ENST00000507401 MXD1Q05195 221 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms