RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ABCA12Q86UK0 2595 aa10.07□□□□□ -0.8
CUX1-210ENST00000497815 TACC2O95359 2948 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 IGKV1-9A0A0C4DH69 117 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 hCG_1807616A0A1W2PRN6 198 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 MAGEA13PA6NCF6 341 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 OR5B21A6NL26 309 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 CCRL2O00421 344 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 RGS9O75916 674 aaPredicted RBP10.06□□□□□ -0.8
CUX1-210ENST00000497815 ATF1P18846 271 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 AZGP1P25311 298 aaKnown RBP10.06□□□□□ -0.8
CUX1-210ENST00000497815 CRYBB2P43320 205 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 GNG3P63215 75 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 FABP5Q01469 135 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 ZNF154Q13106 437 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 CNN3Q15417 329 aaKnown RBP10.06□□□□□ -0.8
CUX1-210ENST00000497815 HFEQ30201 348 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 FAM27D1Q5T7N8 215 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 CLEC2AQ6UVW9 174 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 ZNF826PQ6ZT77 177 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 KRT74Q7RTS7 529 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 PARP16Q8N5Y8 322 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 BOLLQ8N9W6 283 aaKnown RBP10.06□□□□□ -0.8
CUX1-210ENST00000497815 OR1M1Q8NGA1 313 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 OR5A2Q8NGI9 324 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 OR5D14Q8NGL3 314 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 RPL3LQ92901 407 aaKnown RBP10.06□□□□□ -0.8
CUX1-210ENST00000497815 DERL3Q96Q80 235 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 FOXC2Q99958 501 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 FN3KRPQ9HA64 309 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 NOX4Q9NPH5 578 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 NDUFB11Q9NX14 153 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 DCAF16Q9NXF7 216 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 SF3B6Q9Y3B4 125 aaKnown RBP10.06□□□□□ -0.8
CUX1-210ENST00000497815 CSMD2Q7Z408 3487 aa10.06□□□□□ -0.8
CUX1-210ENST00000497815 TRBV5-7A0A0A0MS05 114 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 PQLC2LA1A4F0 135 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 TMEM210A6NLX4 147 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 CDIPTO14735 213 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 SULT1B1O43704 296 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 CYB5R3P00387 301 aaPredicted RBP10.05□□□□□ -0.8
CUX1-210ENST00000497815 PLATP00750 562 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 HCKP08631 526 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 RAB3AP20336 220 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 MAPK3P27361 379 aaPredicted RBP10.05□□□□□ -0.8
CUX1-210ENST00000497815 GABRA5P31644 462 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 TGFBR2P37173 567 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 PMELP40967 661 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 PDLIM4P50479 330 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 PPP3R1P63098 170 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 TRAM1Q15629 374 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 CLEC12BQ2HXU8 276 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 SYT6Q5T7P8 510 aaPredicted RBP10.05□□□□□ -0.8
CUX1-210ENST00000497815 ASPHD2Q6ICH7 369 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 UTS2BQ765I0 119 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 ANGPTL5Q86XS5 388 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 CELF2-AS1Q8N7Q2 184 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 SCCPDHQ8NBX0 429 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 OR51A2Q8NGJ7 313 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 OR11L1Q8NGX0 322 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 FAM168AQ92567 244 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 BORCS8Q96FH0 119 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 TECTBQ96PL2 329 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 SPACA5Q96QH8 159 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 MRPS26Q9BYN8 205 aaKnown RBP10.05□□□□□ -0.8
CUX1-210ENST00000497815 CKLFQ9UBR5 152 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 POLQO75417 2590 aa10.05□□□□□ -0.8
CUX1-210ENST00000497815 ARFGEF3Q5TH69 2177 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 TRAV8-7A0A075B6U6 113 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 LRP5LA4QPB2 252 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 TRIM64CA6NLI5 447 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 LRRC30A6NM36 301 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 GABRPO00591 440 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 PIN1P1O15428 100 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 PPIHO43447 177 aaKnown RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 RP2O75695 350 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 IRF2P14316 349 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 PRKACBP22694 351 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 PSMA1P25786 263 aaKnown RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 GATA4P43694 442 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 HAAOP46952 286 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 FUT6P51993 359 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 MTCP1P56278 107 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 GMFBP60983 142 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 HOXA4Q00056 320 aaPredicted RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 HSD17B12Q53GQ0 312 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 AVPI1Q5T686 147 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 HAGHLQ6PII5 290 aaPredicted RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 UNQ9370/PRO34162Q6UXP9 181 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 TMEM91Q6ZNR0 172 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 RNF144BQ7Z419 303 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 SATL1Q86VE3 508 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 C11orf53Q8IXP5 236 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 BATF2Q8N1L9 274 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 THRSPQ92748 146 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 RFT1Q96AA3 541 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 Q96MF0 132 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 NKX3-1Q99801 234 aaPredicted RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 PPIL3Q9H2H8 161 aaKnown RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 OR51I2Q9H344 312 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 METTL17Q9H7H0 456 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms