RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 OR2A2Q6IF42 318 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 CLEC18BQ6UXF7 455 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 TMEM156Q8N614 296 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 RAB3CQ96E17 227 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 RBM24Q9BX46 236 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 SLC26A1Q9H2B4 701 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 PROK2Q9HC23 129 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 FANCFQ9NPI8 374 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF629Q9UEG4 869 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 COLQQ9Y215 455 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 FAM221AA4D161 298 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 TP53I11O14683 189 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 TNFSF11O14788 317 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 KLK3P07288 261 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 NAT6Q93015 286 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 SCPEP1Q9HB40 452 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF407Q9C0G0 2248 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 AMY2BP19961 511 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 SPINK2P20155 84 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 CD80P33681 288 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 GPR85P60893 370 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 PABPC1L2AQ5JQF8 200 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 BAP18Q8IXM2 172 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 C20orf196Q8IYI0 205 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 PIGTQ969N2 578 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 EDEM2Q9BV94 578 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 PRELID3BQ9Y3B1 194 aa14.51□□□□□ -0.09
CCDC88B-210ENST00000494566 IGKV1-9A0A0C4DH69 117 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 MED6O75586 246 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 FGF5P12034 268 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 SP6Q3SY56 376 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 PGAP1Q75T13 922 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 DYRK2Q92630 601 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 TMEM230Q96A57 120 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 LPAR5Q9H1C0 372 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 PIGMQ9H3S5 423 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 C9JQL5 133 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 CRYBA1P05813 215 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 MUC1P15941 1255 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 OR3A2P47893 321 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 TMEM50BP56557 158 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 CSNK2A1P68400 391 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 PDZK1IP1Q13113 114 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 MEF2DQ14814 521 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 CSNK2A3Q8NEV1 391 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 ISOC2Q96AB3 205 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 LYZL4Q96KX0 146 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 EHFQ9NZC4 300 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 LSM5Q9Y4Y9 91 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 KNTC1P50748 2209 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 NCKAP5O14513 1909 aa14.5□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF98A6NK75 572 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 GABRR1P24046 479 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 CSNK1A1P48729 337 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 TRIM61Q5EBN2 209 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 YRDCQ86U90 279 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 SVBPQ8N300 66 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 EIF4E3Q8N5X7 224 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 SEMA6DQ8NFY4 1073 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 OR51T1Q8NGJ9 327 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 OR10Z1Q8NGY1 313 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 PGAM5Q96HS1 289 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 IMMP1LQ96LU5 166 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 CNTNAP3BQ96NU0 1288 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 DKKL1Q9UK85 242 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 BPNT1O95861 308 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 TPT1P13693 172 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 FAHP16930 419 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 RAB6AP20340 208 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 SSBP1Q04837 148 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 TCEAL6Q6IPX3 200 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 RXFP4Q8TDU9 374 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 TCEAL3Q969E4 200 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 HDGFL3Q9Y3E1 203 aa14.49□□□□□ -0.09
CCDC88B-210ENST00000494566 ZIC3O60481 467 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 SLC35A1P78382 337 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 HFEQ30201 348 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 TSPO2Q5TGU0 170 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 SHEQ5VZ18 495 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 AGBL5Q8NDL9 886 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 C1orf147Q96MC9 270 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 IGKV1D-8A0A087WSZ0 117 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 A0A0J9YW62 118 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 TMEM14DPA8MWL7 114 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 PATE4P0C8F1 98 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 LPAR6P43657 344 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 RRADP55042 308 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 HIST3H3Q16695 136 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 TOMM40LQ969M1 308 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 ARL11Q969Q4 196 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 TMEM59Q9BXS4 323 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 SRXN1Q9BYN0 137 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 CYTL1Q9NRR1 136 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 TNRC6BQ9UPQ9 1833 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 NPIPA2E9PIF3 369 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 NPIPA3F8WFD2 350 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 CDC14BO60729 498 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 SLC25A4P12235 298 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 LIFP15018 202 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms