RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NDRG2Q9UN36 371 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 SIGLEC7Q9Y286 467 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 CHTOPQ9Y3Y2 248 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TNIKQ9UKE5 1360 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 TICRRQ7Z2Z1 1910 aa1.54□□□□□ -2.16
CCDC88A-212ENST00000474059 GOLGA8JA6NMD2 632 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 BTNL10A8MVZ5 291 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 DFFAO00273 331 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 CCDC22O60826 627 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 UPK1BO75841 260 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 SMC2O95347 1197 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 TTC4O95801 387 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 OTCP00480 354 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 GCGP01275 180 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 GOLGA8HP0CJ92 632 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 STAG3L2P0CL84 134 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 IVDP26440 423 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 SLC35A1P78382 337 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 FUT5Q11128 374 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 NKAIN1Q4KMZ8 207 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 LUZP6Q538Z0 58 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 KLHL12Q53G59 568 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 ARHGAP18Q8N392 663 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 MIR7-3HGQ8N6C7 128 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 LRRC52Q8N7C0 313 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 DOCK8Q8NF50 2099 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 OR4M2Q8NGB6 313 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 OR6K6Q8NGW6 343 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 OR10Z1Q8NGY1 313 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 OR1S1Q8NH92 325 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM234Q8WY98 164 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 IP6K3Q96PC2 410 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 ALS2CR12Q96Q35 445 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 MARVELD1Q9BSK0 173 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 CHID1Q9BWS9 393 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 CHRNA10Q9GZZ6 450 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 FANCEQ9HB96 536 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 IFNKQ9P0W0 207 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 VAX2Q9UIW0 290 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 KLF12Q9Y4X4 402 aa1.53□□□□□ -2.16
CCDC88A-212ENST00000474059 IGHV2OR16-5A0A0B4J2B6 119 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 CENPBD1B2RD01 187 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 MYL12BO14950 172 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 GMDSO60547 372 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 TRAPPC6AO75865 159 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SCO1O75880 301 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 PLEKHA8P1O95397 391 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 ETHE1O95571 254 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 LHBP01229 141 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC35G6P0C7Q6 338 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 NTF3P20783 257 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 CPN2P22792 545 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 IL3RAP26951 378 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 GNRHRP30968 328 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 HCCSP53701 268 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 MTPNP58546 118 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 TAS2R43P59537 309 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 PSMC5P62195 406 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC35B1P78383 322 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 ELF3P78545 371 aaPredicted RBP1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 ST3GAL4Q11206 333 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 ATP6V1FQ16864 119 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 CPTPQ5TA50 214 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC7A5P1Q8MH63 180 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 ZCCHC24Q8N2G6 241 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 STK40Q8N2I9 435 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 OR4A15Q8NGL6 344 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 S100PBPQ96BU1 408 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 WDR34Q96EX3 536 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SMARCD1Q96GM5 515 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SNF8Q96H20 258 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 Q96MT0 163 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 ZFP3Q96NJ6 502 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 GPR82Q96P67 336 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 TAS2R5Q9NYW4 299 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 FLVCR2Q9UPI3 526 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 PPIL1Q9Y3C6 166 aa1.52□□□□□ -2.17
CCDC88A-212ENST00000474059 SCN1AP35498 2009 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 IGHV6-1A0A0B4J1U7 121 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 TRAV8-4A0A0B4J246 113 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 TRAV8-6A0A0B4J262 113 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 IGKV1-6A0A0C4DH72 117 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 A0A0J9YYE9 177 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 ISPDA4D126 451 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 ZNF98A6NK75 572 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CEACAM18A8MTB9 384 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 C16orf90A8MZG2 172 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 J3QT63 122 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 KDELR3O43731 214 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CBR3O75828 277 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 IGKV1-39P01597 117 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 P01737 135 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 TRBC1P01850 177 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 IGKV1D-39P04432 117 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CD28P10747 220 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 HOXB8P17481 243 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 NELFEP18615 380 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 GALR1P47211 349 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 PPP1CAP62136 330 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms