RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NIPAL2Q9H841 368 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 ZNF556Q9HAH1 456 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 ZNRD1Q9P1U0 126 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 POMPQ9Y244 141 aa16.24■□□□□ 0.19
COL9A3-210ENST00000472880 GSC2O15499 205 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 AKR7A2O43488 359 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 E2F6O75461 281 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 AMY2BP19961 511 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 SLC35D3Q5M8T2 416 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 DHRS7BQ6IAN0 325 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-210ENST00000472880 KRT77Q7Z794 578 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 PAPD5Q8NDF8 572 aaKnown RBP16.23■□□□□ 0.19
COL9A3-210ENST00000472880 HPSE2Q8WWQ2 592 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 MED30Q96HR3 178 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 LYZL4Q96KX0 146 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 GAFA1Q96PS6 74 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 CADM1Q9BY67 442 aaKnown RBP16.23■□□□□ 0.19
COL9A3-210ENST00000472880 MMP27Q9H306 513 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 SLC25A10Q9UBX3 287 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-210ENST00000472880 LAMP5Q9UJQ1 280 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 KLHDC2Q9Y2U9 406 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 LRP12Q9Y561 859 aa16.23■□□□□ 0.19
COL9A3-210ENST00000472880 A0A1W2PQ09 198 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 A0A1W2PRD5 423 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 A0A1W2PRF3 423 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 A0A1W2PRM7 423 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 RNASEK-C17orf49H0YIS7 233 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 NPFFO15130 113 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 PAHP00439 452 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 OSMP13725 252 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 HOXB6P17509 224 aaKnown RBP16.22■□□□□ 0.19
COL9A3-210ENST00000472880 PRB3Q04118 309 aaPredicted RBP16.22■□□□□ 0.19
COL9A3-210ENST00000472880 KLRD1Q13241 179 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 TAF9Q16594 264 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 ZNF788Q6ZQV5 615 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 TMEM179BQ7Z7N9 219 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 SPATA24Q86W54 205 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 CPOQ8IVL8 374 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 TEX12Q9BXU0 123 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 NLKQ9UBE8 527 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 VPREB3Q9UKI3 123 aa16.22■□□□□ 0.19
COL9A3-210ENST00000472880 ZNF816-ZNF321PA0A0X1KG74 233 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 CLPXO76031 633 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 TFF1P04155 84 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 NDUFB7P17568 137 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 GLRA1P23415 457 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 GPM6AP51674 278 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 DLX1P56177 255 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 KRTAP10-3P60369 221 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 DGUOKQ16854 277 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 FAM76BQ5HYJ3 339 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 NCR3LG1Q68D85 454 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 COMMD2Q86X83 199 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 Q8N7P7 452 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 ZSCAN4Q8NAM6 433 aaPredicted RBP16.21■□□□□ 0.19
COL9A3-210ENST00000472880 BBS1Q8NFJ9 593 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 ANGPTL6Q8NI99 470 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 UBE2FQ969M7 185 aa16.21■□□□□ 0.19
COL9A3-210ENST00000472880 FGF23Q9GZV9 251 aaPredicted RBP16.21■□□□□ 0.19
COL9A3-210ENST00000472880 TCRBV3S1A0A5B6 114 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 OR2AT4A6NND4 320 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 M0R1W7 72 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 SIGLEC5O15389 551 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 ATP5HO75947 161 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 DCTDP32321 178 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 SAA4P35542 130 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 MAP2K3P46734 347 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 GABRA2P47869 451 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 RASSF2P50749 326 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 CAV3P56539 151 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 PROK1P58294 105 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 CDK5Q00535 292 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 BLMHQ13867 455 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 KCTD18Q6PI47 426 aaPredicted RBP16.2■□□□□ 0.18
COL9A3-210ENST00000472880 Q6ZSV7 163 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 METTL8Q9H825 291 aaKnown RBP16.2■□□□□ 0.18
COL9A3-210ENST00000472880 TCF7L1Q9HCS4 588 aa16.2■□□□□ 0.18
COL9A3-210ENST00000472880 MEIOCA2RUB1 952 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 ACAA1P09110 424 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-210ENST00000472880 ANXA8P13928 327 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 ALOX5APP20292 161 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 SLC2A5P22732 501 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 GNG3P63215 75 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 APOFQ13790 326 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 CEP78Q5JTW2 689 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 ASPHD2Q6ICH7 369 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 C1orf122Q6ZSJ8 110 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 HS3ST5Q8IZT8 346 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 PNKDQ8N490 385 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 OR5R1Q8NH85 324 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 TNFRSF14Q92956 283 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 RBM4BQ9BQ04 359 aaKnown RBP16.19■□□□□ 0.18
COL9A3-210ENST00000472880 YIPF3Q9GZM5 350 aa16.19■□□□□ 0.18
COL9A3-210ENST00000472880 A0A0U1RQV5 110 aa16.18■□□□□ 0.18
COL9A3-210ENST00000472880 TMEM269A0A1B0GVZ9 245 aa16.18■□□□□ 0.18
COL9A3-210ENST00000472880 ACOD1A6NK06 481 aa16.18■□□□□ 0.18
COL9A3-210ENST00000472880 ZNF732B4DXR9 585 aa16.18■□□□□ 0.18
COL9A3-210ENST00000472880 FKBP6O75344 327 aa16.18■□□□□ 0.18
COL9A3-210ENST00000472880 RHBDL1O75783 438 aa16.18■□□□□ 0.18
COL9A3-210ENST00000472880 UBE2E1P51965 193 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms