RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 DCUN1D4Q92564 292 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 ANGPTL4Q9BY76 406 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 WDR54Q9H977 334 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 MAB21L2Q9Y586 359 aa12.04□□□□□ -0.48
CCDC88A-211ENST00000471947 NAP1L6A6NFF2 107 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 NTN3O00634 580 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 GRPP07492 148 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 NR2C1P13056 603 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF44P15621 663 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 PTBP1P26599 531 aaKnown RBP eCLIP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 RAC3P60763 192 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 RAB1AP62820 205 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 OR2T2Q6IF00 324 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 SLC25A47Q6Q0C1 308 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 PGAP1Q75T13 922 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 MYPOPQ86VE0 399 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 APH1AQ96BI3 265 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 CPNE2Q96FN4 548 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF700Q9H0M5 742 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 LIPGQ9Y5X9 500 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 ATMQ13315 3056 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 FBXO24O75426 580 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 IGF2P01344 180 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 IFNA7P01567 189 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 LUMP51884 338 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 PSG4Q00888 419 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 ATPAF1Q5TC12 328 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 DTX1Q86Y01 620 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 TCTE3Q8IZS6 198 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 TMEM251Q8N6I4 163 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 OR2M7Q8NG81 312 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 OR1F12Q8NHA8 337 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 LRRC20Q8TCA0 184 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 C15orf40Q8WUR7 153 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 TRIB1Q96RU8 372 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 SLA2Q9H6Q3 261 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 UBQLN2Q9UHD9 624 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 HSPA12AO43301 675 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 RP2O75695 350 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 WISP2O76076 250 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 NRASP01111 189 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 PPP3CBP16298 524 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 SRD5A2P31213 254 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 SOX8P57073 446 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 DEFA5Q01523 94 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF92Q03936 586 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 SLC10A1Q14973 349 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 INO80EQ8NBZ0 244 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 OR5L1Q8NGL2 311 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 CPT1CQ8TCG5 803 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 MRPL13Q9BYD1 178 aaKnown RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 PPA2Q9H2U2 334 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 GPR160Q9UJ42 338 aa12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 FBXO9Q9UK97 447 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-211ENST00000471947 GEMIN2O14893 280 aaKnown RBP12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 CDC14BO60729 498 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 IGHV3-13P01766 116 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 IGHV3-7P01780 117 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 MRPS10P82664 201 aaKnown RBP12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 RIPPLY1Q0D2K3 151 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 HAGHLQ6PII5 290 aaPredicted RBP12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 M1APQ8TC57 530 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 SLAMF9Q96A28 289 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 SGK3Q96BR1 496 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 CDC6Q99741 560 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 PRSS50Q9UI38 385 aa12.02□□□□□ -0.48
CCDC88A-211ENST00000471947 A0A1B0GTI1 187 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 CNOT4O95628 575 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF250P15622 560 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 ATP1B3P54709 279 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 GRB2P62993 217 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 IKZF1Q13422 519 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 TRA2AQ13595 282 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 SEZ6L2Q6UXD5 910 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 NKAIN3Q8N8D7 197 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 PPP1R1CQ8WVI7 109 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 SECTM1Q8WVN6 248 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF2Q9BSG1 426 aaPredicted RBP12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 TTTY12Q9BZ98 90 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 IGKV1-9A0A0C4DH69 117 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF587BE7ETH6 402 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 AGFG2O95081 481 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 CD46P15529 392 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 EPHA1P21709 976 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 SERPINF1P36955 418 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 MICBQ29980 383 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 THRSPQ92748 146 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 ZC3HAV1LQ96H79 300 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 C7orf50Q9BRJ6 194 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 PROK2Q9HC23 129 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 ST3GAL6Q9Y274 331 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 VSIG4Q9Y279 399 aa12.02□□□□□ -0.49
CCDC88A-211ENST00000471947 INTS1Q8N201 2190 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 KANTRA0A1W2PQU2 76 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 VAMP5O95183 116 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 OMGP23515 440 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 NUP62P37198 522 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 ENDOGQ14249 297 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 DUSP13Q9UII6 198 aa12.01□□□□□ -0.49
CCDC88A-211ENST00000471947 A0A1W2PNU3 283 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms