RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PAX2Q02962 417 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 KRTAP24-1Q3LI83 254 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 ZNF684Q5T5D7 378 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 DOK3Q7L591 496 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 CATSPERDQ86XM0 798 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 BPIFB2Q8N4F0 458 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 OR5A2Q8NGI9 324 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 SPATA3Q8NHX4 192 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 C12orf43Q96C57 262 aaKnown RBP12.65□□□□□ -0.38
LIMS3-201ENST00000437679 Q96MT0 163 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 ADI1Q9BV57 179 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 FGF23Q9GZV9 251 aaPredicted RBP12.65□□□□□ -0.38
LIMS3-201ENST00000437679 CTSZQ9UBR2 303 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 GNG8Q9UK08 70 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 SLC22A13Q9Y226 551 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 PCDHGB1Q9Y5G3 927 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 V9GYS6 101 aa12.65□□□□□ -0.38
LIMS3-201ENST00000437679 KIR2DS1A0A191URI9 304 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 A0A1B0GTI1 187 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 A0A1B0GVI7 797 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 DAPL1A0PJW8 107 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 DHRS7CA6NNS2 312 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 TMPRSS2O15393 492 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 ENSAO43768 121 aaKnown RBP12.64□□□□□ -0.39
LIMS3-201ENST00000437679 FSHBP01225 129 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 GMFBP60983 142 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF85Q03923 595 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 ODF4Q2M2E3 257 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 TP53I3Q53FA7 332 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 CLVS2Q5SYC1 327 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 SLC36A1Q7Z2H8 476 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 PHC2Q8IXK0 858 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF555Q8NEP9 628 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 OR14K1Q8NGZ2 314 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 RORBQ92753 470 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 RDH12Q96NR8 316 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 SUCNR1Q9BXA5 334 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 OR51I2Q9H344 312 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 FAM118AQ9NWS6 357 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 KAAG1Q9UBP8 84 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 DNAJB11Q9UBS4 358 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 AASSQ9UDR5 926 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 NUP50Q9UKX7 468 aa12.64□□□□□ -0.39
LIMS3-201ENST00000437679 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.63□□□□□ -0.39
LIMS3-201ENST00000437679 DLGAP1O14490 977 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 SYT7O43581 403 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 RGS9O75916 674 aaPredicted RBP12.63□□□□□ -0.39
LIMS3-201ENST00000437679 PPIAL4GP0DN37 164 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 GABRB1P18505 474 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 CCL1P22362 96 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 DMRTC1Q5HYR2 192 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 WDR38Q5JTN6 314 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 Q6ZSR3 168 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 KCTD20Q7Z5Y7 419 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 ENTHD1Q8IYW4 607 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 ACBD7Q8N6N7 88 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 CCDC54Q8NEL0 328 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF671Q8TAW3 534 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 DACT3Q96B18 629 aaPredicted RBP12.63□□□□□ -0.39
LIMS3-201ENST00000437679 MRPL48Q96GC5 212 aaKnown RBP12.63□□□□□ -0.39
LIMS3-201ENST00000437679 JMJD8Q96S16 334 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 MYCBPQ99417 103 aaPredicted RBP12.63□□□□□ -0.39
LIMS3-201ENST00000437679 CCL13Q99616 98 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 RASSF4Q9H2L5 321 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 PLEKHA1Q9HB21 404 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 GPR173Q9NS66 373 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 ACOXLQ9NUZ1 547 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 SMPD3Q9NY59 655 aaPredicted RBP12.63□□□□□ -0.39
LIMS3-201ENST00000437679 STAB1Q9NY15 2570 aa12.63□□□□□ -0.39
LIMS3-201ENST00000437679 NKX6-3A6NJ46 265 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 C22orf46C9J442 243 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 J3QRE1 110 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 DVL1O14640 695 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 SLC16A6O15403 523 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 AKR7A2O43488 359 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 ECDO95905 644 aaPredicted RBP12.62□□□□□ -0.39
LIMS3-201ENST00000437679 LIPFP07098 398 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 DBTP11182 482 aaKnown RBP12.62□□□□□ -0.39
LIMS3-201ENST00000437679 GLRA1P23415 457 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 ISL1P61371 349 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 ZNF91Q05481 1191 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 C11orf91Q3C1V1 193 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 CDONQ4KMG0 1287 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 TMEM42Q69YG0 159 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 HAGHLQ6PII5 290 aaPredicted RBP12.62□□□□□ -0.39
LIMS3-201ENST00000437679 USP43Q70EL4 1123 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 PNLDC1Q8NA58 520 aaKnown RBP12.62□□□□□ -0.39
LIMS3-201ENST00000437679 RHOXF1Q8NHV9 184 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 ST8SIA4Q92187 359 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 LGALS12Q96DT0 336 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 SEH1LQ96EE3 360 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 SLC6A7Q99884 636 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 C19orf24Q9BVV8 132 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 WDR13Q9H1Z4 485 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 SMURF1Q9HCE7 757 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 SNTG1Q9NSN8 517 aa12.62□□□□□ -0.39
LIMS3-201ENST00000437679 EXOGQ9Y2C4 368 aaKnown RBP12.62□□□□□ -0.39
LIMS3-201ENST00000437679 A6NIN4 97 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 NDUFB3O43676 98 aa12.61□□□□□ -0.39
LIMS3-201ENST00000437679 RHBDL1O75783 438 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms