RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 GSKIPQ9P0R6 139 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 WNT16Q9UBV4 365 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 TMEM218A2RU14 115 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 NPIPA2E9PIF3 369 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 NPIPA3F8WFD2 350 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 ATG12O94817 140 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 ACTL6AO96019 429 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 CD63P08962 238 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 HOXB5P09067 269 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 RPS2P15880 293 aaKnown RBP10.35□□□□□ -0.75
CD44-209ENST00000433892 GABRR1P24046 479 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 THBS4P35443 961 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 RAB32Q13637 225 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 CHRFAM7AQ494W8 412 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 ZNF585AQ6P3V2 769 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 PRSS54Q6PEW0 395 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 C6orf201Q7Z4U5 140 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 WNT2BQ93097 391 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 ZNF837Q96EG3 531 aaPredicted RBP10.35□□□□□ -0.75
CD44-209ENST00000433892 OR2S2Q9NQN1 319 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 PLEK2Q9NYT0 353 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 GHRLQ9UBU3 117 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 V9GYS6 101 aa10.35□□□□□ -0.75
CD44-209ENST00000433892 IGKV1D-8A0A087WSZ0 117 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 A0A0U1RQV5 110 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 RAB19A4D1S5 217 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 M0R135 149 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 GPR31O00270 319 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 ABCD4O14678 606 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 NR2C1P13056 603 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 ALDH3B1P43353 468 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 SRSF3P84103 164 aaKnown RBP10.34□□□□□ -0.75
CD44-209ENST00000433892 ZNF169Q14929 603 aaPredicted RBP10.34□□□□□ -0.75
CD44-209ENST00000433892 C10orf128Q5T292 105 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 LYSMD4Q5XG99 296 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 UQCC3Q6UW78 93 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 FOXRED2Q8IWF2 684 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 RNF141Q8WVD5 230 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 PP6455Q8WZ26 134 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 TMEM54Q969K7 222 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 ZNF799Q96GE5 643 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 NECAB3Q96P71 396 aaPredicted RBP10.34□□□□□ -0.75
CD44-209ENST00000433892 TSNAXQ99598 290 aaKnown RBP10.34□□□□□ -0.75
CD44-209ENST00000433892 CHST5Q9GZS9 411 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 SLC6A15Q9H2J7 730 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 ACKR4Q9NPB9 350 aa10.34□□□□□ -0.75
CD44-209ENST00000433892 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.34□□□□□ -0.75
CD44-209ENST00000433892 MCTS1Q9ULC4 181 aaKnown RBP10.34□□□□□ -0.75
CD44-209ENST00000433892 IGHV1-45A0A0A0MS14 117 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 SERPINE3A8MV23 424 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 MASP2O00187 686 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 DHHO43323 396 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 ZIC3O60481 467 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 UMODP07911 640 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 SFTPBP07988 381 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 ADCYAP1P18509 176 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 PRSS12P56730 875 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 S100A10P60903 97 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 NAAAQ02083 359 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 HLA-BQ31612 363 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 SNAI3Q3KNW1 292 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 PLEKHN1Q494U1 663 aaPredicted RBP10.33□□□□□ -0.76
CD44-209ENST00000433892 PDSS1Q5T2R2 415 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 TMEM123Q8N131 208 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 OR9K2Q8NGE7 335 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 HAS2Q92819 552 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 FBXO17Q96EF6 278 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 C2orf50Q96LR7 162 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 AIFM2Q9BRQ8 373 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 HDHD3Q9BSH5 251 aaPredicted RBP10.33□□□□□ -0.76
CD44-209ENST00000433892 PROK2Q9HC23 129 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 TMEM100Q9NV29 134 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 PTRH2Q9Y3E5 179 aaKnown RBP10.33□□□□□ -0.76
CD44-209ENST00000433892 A0A087WZY1 265 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 DHRS7CA6NNS2 312 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 TNFSF11O14788 317 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 EIF1BO60739 113 aaKnown RBP10.33□□□□□ -0.76
CD44-209ENST00000433892 CD79AP11912 226 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 ICAM2P13598 275 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 LIFP15018 202 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 CPT2P23786 658 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 GUCA2BQ16661 112 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 OPN5Q6U736 354 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 SLC16A14Q7RTX9 510 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 POC1AQ8NBT0 407 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 CLRN3Q8NCR9 226 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 PIGQQ9BRB3 760 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 ADAT1Q9BUB4 502 aaKnown RBP10.33□□□□□ -0.76
CD44-209ENST00000433892 ULBP2Q9BZM5 246 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 PLEKHJ1Q9NW61 149 aa10.33□□□□□ -0.76
CD44-209ENST00000433892 PMS2P1A4D2B8 440 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 CSTBP04080 98 aaKnown RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 FAM157CP0CG43 387 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 TMEM225BP0DP42 221 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 LYL1P12980 280 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 OTX1P32242 354 aaPredicted RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 PTGER4P35408 488 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 DSCR4P56555 118 aaPredicted RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 CHAF1BQ13112 559 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 TMEM88Q6PEY1 159 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms