RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 HSD17B10Q99714 261 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 C20orf141Q9NUB4 165 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 MAP1LC3B2A6NCE7 125 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 B4DEV8 164 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 TIAL1Q01085 375 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 PRSS42Q7Z5A4 293 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 RDH5Q92781 318 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 KTI12Q96EK9 354 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 MAP1LC3BQ9GZQ8 125 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 PGPEP1Q9NXJ5 209 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 CHST2Q9Y4C5 530 aa12.09□□□□□ -0.47
CCDC88A-204ENST00000413716 HCRTR1O43613 425 aa12.08□□□□□ -0.47
CCDC88A-204ENST00000413716 MAP6Q96JE9 813 aa12.08□□□□□ -0.47
CCDC88A-204ENST00000413716 ANGPTL4Q9BY76 406 aa12.08□□□□□ -0.47
CCDC88A-204ENST00000413716 ST3GAL6Q9Y274 331 aa12.08□□□□□ -0.47
CCDC88A-204ENST00000413716 ADGRB2O60241 1585 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 PCSK6P29122 969 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 CD70P32970 193 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 CDX1P47902 265 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 ERVFRD-1P60508 538 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 PARS2Q7L3T8 475 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 MARCH1Q8TCQ1 289 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 NTNG2Q96CW9 530 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 RAB40CQ96S21 281 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 DUSP21Q9H596 190 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 H0YGG7 62 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 CST4P01036 141 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 HTN1P15515 57 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 PRSS8Q16651 343 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 ARL6IP6Q8N6S5 226 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 C1QTNF3Q9BXJ4 246 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 TIAM2Q8IVF5 1701 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 MCM3APO60318 1980 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 DDX60Q8IY21 1712 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 SIGLEC6O43699 453 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 PGA3P0DJD8 388 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 LIPAP38571 399 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 HAAOP46952 286 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 VN1R17PQ8TDU5 208 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 SMIM19Q96E16 107 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 DTD2Q96FN9 168 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 FUCA1P04066 466 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 RPS4Y1P22090 263 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 HTR6P50406 440 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 LIMK1P53667 647 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 TRAT1Q6PIZ9 186 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM136Q6ZRR5 245 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 OR51E1Q8TCB6 317 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 RSRP1Q9BUV0 290 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC5A6Q9Y289 635 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 CST7O76096 145 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 HIST1H1EP10412 219 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 LBX1P52954 281 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 GTF3C1Q12789 2109 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 OR2W5A6NFC9 320 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 M0R135 149 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 KIR3DL2P43630 455 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 ERVS71-1P61550 626 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF799Q96GE5 643 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 RAXQ9Y2V3 346 aa12.08□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC38A11Q08AI6 406 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 FAM24BQ8N5W8 94 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 AMMECR1Q9Y4X0 333 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 FZD9O00144 591 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 CDC20Q12834 499 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 Q6ZPB1 254 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 CBARPQ8N350 705 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 OR52B4Q8NGK2 314 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 SFRP2Q96HF1 295 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 MEGF10Q96KG7 1140 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 COA3Q9Y2R0 106 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 A0A1B0GWA3 101 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 TEAD1P28347 426 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 GGTA1PQ4G0N0 100 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 NANOGP1Q8N7R0 232 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 DIRC3C9JPN6 131 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 TPSD1Q9BZJ3 242 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 GPR84Q9NQS5 396 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 NUP188Q5SRE5 1749 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 PCBP3P57721 371 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 ARF6P62330 175 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 UBE2ZQ9H832 354 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 OCIAD1Q9NX40 245 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 CA12O43570 354 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 HAND1O96004 215 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 PLA1AQ53H76 456 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 KHDC3LQ587J8 217 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 FNDC7Q5VTL7 733 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM81Q6P7N7 255 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF383Q8NA42 475 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 SLC25A22Q9H936 323 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 GPANK1O95872 356 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 YBX1P67809 324 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 FAM74A3Q4VXF1 159 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 CCDC190Q86UF4 302 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF511Q8NB15 262 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 ZNF385DQ9H6B1 395 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 TMEM30CPA0ZSE6 113 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 SERTM1A2A2V5 107 aa12.07□□□□□ -0.48
CCDC88A-204ENST00000413716 H3BP45 60 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms