RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TPRA1Q86W33 373 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 OR51A4Q8NGJ6 313 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 OR10AC1Q8NH08 325 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 ELMOD3Q96FG2 381 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 CMTM3Q96MX0 182 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 RTL8AQ9BWD3 113 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 CACNG6Q9BXT2 260 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 IKZF2Q9UKS7 526 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 APCP25054 2843 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 A0A1B0GVI7 797 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 H0YL77 283 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 J3QT63 122 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 SYT7O43581 403 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 TPPPO94811 219 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 GABARAPO95166 117 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 LCKP06239 509 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 GLAP06280 429 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 TNFRSF1AP19438 455 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 PSMB10P40306 273 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 MAP2K4P45985 399 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 MTNR1BP49286 362 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 GNG3P63215 75 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 KRTAP1-1Q07627 177 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 SLC3A1Q07837 685 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF146Q15072 292 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF404Q494X3 552 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 STUMQ69YW2 141 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM154Q6P9G4 183 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 FOXRED1Q96CU9 486 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-202ENST00000394943 LIME1Q9H400 295 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 LINC00574Q9H8X3 128 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 UBTD1Q9HAC8 227 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 STUB1Q9UNE7 303 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 PRRC2CQ9Y520 2896 aaKnown RBP5.9□□□□□ -1.47
LIMA1-202ENST00000394943 ANKRD30BLA7E2S9 258 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 NRASP01111 189 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 PPIAL4GP0DN37 164 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 Q8IYB0 196 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 OTULINQ96BN8 352 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 TRMT61AQ96FX7 289 aaKnown RBP5.9□□□□□ -1.47
LIMA1-202ENST00000394943 SDSLQ96GA7 329 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 TBX5Q99593 518 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 SYT3Q9BQG1 590 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 ADAT1Q9BUB4 502 aaKnown RBP5.9□□□□□ -1.47
LIMA1-202ENST00000394943 TM2D1Q9BX74 207 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 PIGLQ9Y2B2 252 aa5.9□□□□□ -1.47
LIMA1-202ENST00000394943 USP9YO00507 2555 aaPredicted RBP5.9□□□□□ -1.47
LIMA1-202ENST00000394943 MEGF11A6BM72 1044 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 TPD52L2O43399 206 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 NDUFA2O43678 99 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 MUC1P15941 1255 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 FABP5Q01469 135 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF154Q13106 437 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF841Q6ZN19 808 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 KCTD8Q6ZWB6 473 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 SPATC1Q76KD6 591 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 LY6G5BQ8NDX9 201 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 OR5D14Q8NGL3 314 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 CPNE2Q96FN4 548 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 FN3KRPQ9HA64 309 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 RCC2Q9P258 522 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 DCHS2Q6V1P9 2916 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 BAHCC1Q9P281 2608 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 KIAA1324LA8MWY0 1029 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 TIMM8AO60220 97 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 LMX1BO60663 402 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 ADRA2CP18825 462 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 TNFSF4P23510 183 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 NR4A2P43354 598 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 MAGEB1P43366 347 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 PDLIM4P50479 330 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 CAPZA1P52907 286 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 HIST2H2BCQ6DN03 193 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF573Q86YE8 665 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 TBC1D15Q8TC07 691 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 MRPS24Q96EL2 167 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 EGLN1Q9GZT9 426 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 PPIL3Q9H2H8 161 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 NPTNQ9Y639 398 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 RP1L1Q8IWN7 2480 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 PRRC2AP48634 2157 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 IGHV1-69-2A0A0G2JMI3 117 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 GGT3PA6NGU5 568 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 GABRPO00591 440 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 KNG1P01042 644 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 HPXP02790 462 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 HLA-DPB1P04440 258 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 CSN2P05814 226 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 SLC2A1P11166 492 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 ATP6V1E1P36543 226 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 RPS25P62851 125 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 IL13RA2Q14627 380 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 ARMCX4Q5H9R4 360 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 OR2W3Q7Z3T1 314 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 FAM89BQ8N5H3 189 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 GCSAMQ8N6F7 178 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 COX4I2Q96KJ9 171 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 MICU1Q9BPX6 476 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms