RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PEX10O60683 326 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TGFAP01135 160 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RRASP10301 218 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CNTFRP26992 372 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 MAT1AQ00266 395 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF404Q494X3 552 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 WIPI1Q5MNZ9 446 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 PM20D1Q6GTS8 502 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 LETMD1Q6P1Q0 360 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 MBOAT2Q6ZWT7 520 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 DNAJB8Q8NHS0 232 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RNASEH2CQ8TDP1 164 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ROPN1LQ96C74 230 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 C4orf36Q96KX1 117 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SLC25A33Q9BSK2 321 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 LRRC61Q9BV99 259 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 LTB4R2Q9NPC1 389 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 POMT2Q9UKY4 750 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 MRPS28Q9Y2Q9 187 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 NEXMIFQ5QGS0 1516 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 IGHV3-21A0A0B4J1V1 117 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SNURFLB1AK76 121 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 H3BMM0 161 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SIX3O95343 332 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 GIPP09681 153 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 HNRNPH3P31942 346 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 MTNR1AP48039 350 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 GIPRP48546 466 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 FOXK2Q01167 660 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 PRSS53Q2L4Q9 553 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SIRPB2Q5JXA9 342 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TEX29Q8N6K0 151 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 OR2Y1Q8NGV0 311 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 LRRC29Q8WV35 223 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 UBE2WQ96B02 151 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 DUS3LQ96G46 650 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 WNT5BQ9H1J7 359 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ZFP30Q9Y2G7 519 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 MYH4Q9Y623 1939 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RIMS1Q86UR5 1692 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CDC42BPAQ5VT25 1732 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 A0A0J9YY10 115 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 H3BNC9 293 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF593O00488 134 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 NUTF2P61970 127 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 HIST1H4AP62805 103 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SORDQ00796 357 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 FZD2Q14332 565 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 EXOSC7Q15024 291 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 DMRTA1Q5VZB9 504 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 DPPA3Q6W0C5 159 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 MUC20Q8N307 709 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 BAHD1Q8TBE0 780 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 KREMEN1Q96MU8 473 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TAF9BQ9HBM6 251 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 YAE1D1Q9NRH1 226 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 DCAF13Q9NV06 445 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 JKAMPQ9P055 326 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 HSPB8Q9UJY1 196 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SPATA31A6Q5VVP1 1343 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 LIPFP07098 398 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 VSIG10L2P0DP72 767 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TEAD1P28347 426 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 RPS27AP62979 156 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 UBA52P62987 128 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SMIM21Q3B7S5 101 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CLEC20AQ6ZU45 233 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 MAFAQ8NHW3 353 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 LINC00470Q9BZP3 86 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SPNS1Q9H2V7 528 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PSENENQ9NZ42 101 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 NUBP2Q9Y5Y2 271 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PLIN4Q96Q06 1357 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 AP4M1O00189 453 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 NDUFB2O95178 105 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF205O95201 554 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CD8AP01732 235 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 HLA-DQA1P01909 254 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SLC35E2BP0CK96 405 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CSF2RAP15509 400 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PTGER1P34995 402 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SNRPGP62308 76 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 RANP62826 216 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF770Q6IQ21 691 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TRAT1Q6PIZ9 186 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF562Q6V9R5 426 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TSPAN32Q96QS1 320 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CCL19Q99731 98 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TUBA1CQ9BQE3 449 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ADGRL4Q9HBW9 690 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CNIH4Q9P003 139 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 IGSF9Q9P2J2 1179 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PTGDR2Q9Y5Y4 395 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CLTCQ00610 1675 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 MED13LQ71F56 2210 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 LINC00862A6NCI5 91 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 DPRXA6NFQ7 191 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 NPIPB15A6NHN6 443 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 H7C1C5 153 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PRB2P02812 416 aaPredicted RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms