RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OR52H1Q8NGJ2 320 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 TERB2Q8NHR7 220 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 SGK3Q96BR1 496 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 AIFM2Q9BRQ8 373 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 PINLYPA6NC86 204 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 SGCEO43556 437 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 GP1BAP07359 652 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 FGF2P09038 288 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 ACKR3P25106 362 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 BLVRBP30043 206 aaPredicted RBP16.93■□□□□ 0.3
COL9A3-201ENST00000343916 C11orf87Q6NUJ2 197 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 SPTSSAQ969W0 71 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 WDR13Q9H1Z4 485 aa16.93■□□□□ 0.3
COL9A3-201ENST00000343916 ZNF716A6NP11 495 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 EEF1E1-BLOC1S5C9J1V9 151 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 SDCBPO00560 298 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-201ENST00000343916 UBBP0CG47 229 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 NAT2P11245 290 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 ICAM2P13598 275 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 CLDN15P56746 228 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 LPCAT3Q6P1A2 487 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 C6orf15Q6UXA7 325 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-201ENST00000343916 OR6K3Q8NGY3 331 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 OR10D3Q8NH80 312 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 GPR173Q9NS66 373 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 P4HTMQ9NXG6 502 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 PRR13Q9NZ81 148 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 COMMD9Q9P000 198 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 ANAPC10Q9UM13 185 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 KNTC1P50748 2209 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 KCNAB3O43448 404 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 HTR3BO95264 441 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 RIPPLY1Q0D2K3 151 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 SPINK14Q6IE38 97 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 TFAP2EQ6VUC0 442 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 PDZD9Q8IXQ8 264 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 FAM89BQ8N5H3 189 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 AKR7LQ8NHP1 331 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 PP6455Q8WZ26 134 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 INTS12Q96CB8 462 aaKnown RBP16.92■□□□□ 0.3
COL9A3-201ENST00000343916 SF3B5Q9BWJ5 86 aaKnown RBP16.92■□□□□ 0.3
COL9A3-201ENST00000343916 C5orf66Q9H5L9 145 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 PCDHGA1Q9Y5H4 931 aa16.92■□□□□ 0.3
COL9A3-201ENST00000343916 COL27A1Q8IZC6 1860 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-201ENST00000343916 TOR1AO14656 332 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 AMY2BP19961 511 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 SRSF4Q08170 494 aaKnown RBP16.91■□□□□ 0.3
COL9A3-201ENST00000343916 FGL1Q08830 312 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 CHAF1BQ13112 559 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 ATRAIDQ6UW56 229 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 RAB11FIP2Q7L804 512 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 HAS2Q92819 552 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 ZNF845Q96IR2 970 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-201ENST00000343916 S100A13Q99584 98 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 OCSTAMPQ9BR26 566 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 ARRDC1-AS1Q9H2J1 176 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 BDP1A6H8Y1 2624 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 MTRF1O75570 445 aaKnown RBP16.91■□□□□ 0.3
COL9A3-201ENST00000343916 DUS4LO95620 317 aaKnown RBP16.91■□□□□ 0.3
COL9A3-201ENST00000343916 PLATP00750 562 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 IGHEP01854 428 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 HPNP05981 417 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 CRYGSP22914 178 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 AGTR1P30556 359 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 CALCRP30988 508 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 RFC3P40938 356 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 FAHD2BQ6P2I3 314 aaPredicted RBP16.91■□□□□ 0.3
COL9A3-201ENST00000343916 PLXDC2Q6UX71 529 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 AAED1Q7RTV5 226 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 GALNTL5Q7Z4T8 443 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 GPR137CQ8N3F9 429 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 FAHD2AQ96GK7 314 aa16.91■□□□□ 0.3
COL9A3-201ENST00000343916 C13orf42A0A1B0GVH6 325 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 SYNGR3O43761 229 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 ZNF32P17041 273 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 GDF1P27539 372 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 CYB561P49447 251 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 SNU13P55769 128 aaKnown RBP16.9■□□□□ 0.3
COL9A3-201ENST00000343916 SSPNQ14714 243 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 PNLIPRP3Q17RR3 467 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 VAX1Q5SQQ9 334 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 OR5M9Q8NGP3 310 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 OR5H2Q8NGV7 314 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 ABHD3Q8WU67 409 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 KCNE4Q8WWG9 221 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 TMEM230Q96A57 120 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 PECRQ9BY49 303 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 TMEM38BQ9NVV0 291 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 TNFSF18Q9UNG2 199 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 RNF222A6NCQ9 220 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 FOXI3A8MTJ6 420 aaPredicted RBP16.9■□□□□ 0.3
COL9A3-201ENST00000343916 HPP00738 406 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 IGHV3-9P01782 118 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 GABRR1P24046 479 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 C6orf201Q7Z4U5 140 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 FGFBP3Q8TAT2 258 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 PSMF1Q92530 271 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 GPR132Q9UNW8 380 aa16.9■□□□□ 0.3
COL9A3-201ENST00000343916 C5orf51A6NDU8 294 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ANGPTL7O43827 346 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms