RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DLSTP36957 453 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 SLC16A14Q7RTX9 510 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 FOXRED2Q8IWF2 684 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 SLX1AQ9BQ83 275 aa9.04□□□□□ -0.96
LIMA1-201ENST00000341247 IGKV1D-8A0A087WSZ0 117 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 HMSDA8MTL9 139 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 MPTX1A8MV57 137 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 SIGLEC5O15389 551 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 GLRA1P23415 457 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 OPRM1P35372 400 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 LUMP51884 338 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-201ENST00000341247 RRADP55042 308 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 CLVS2Q5SYC1 327 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 DHRS13Q6UX07 377 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 CDH26Q8IXH8 852 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 SEMA6DQ8NFY4 1073 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 OR2V1Q8NHB1 315 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 TERB2Q8NHR7 220 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF471Q9BX82 626 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ARPC4-TTLL3A0A0A6YYG9 625 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 CYC1P08574 325 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 NMBP08949 121 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 RRASP10301 218 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 SERPINF1P36955 418 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 RPS27AP62979 156 aaKnown RBP9.03□□□□□ -0.96
LIMA1-201ENST00000341247 SSPNQ14714 243 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 FAM27BQ5VT28 67 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF660Q6AZW8 331 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-201ENST00000341247 UNQ6126/PRO20091Q6UXV3 157 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 OR2W3Q7Z3T1 314 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 DTWD2Q8NBA8 298 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 PSMF1Q92530 271 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 FOXB1Q99853 325 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 VRK1Q99986 396 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-201ENST00000341247 STRADBQ9C0K7 418 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ACKR4Q9NPB9 350 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 PLEKHJ1Q9NW61 149 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 MBD2Q9UBB5 411 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 B4E171 279 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 MFNGO00587 321 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 SERPINA5P05154 406 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ICAM2P13598 275 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 PGAM2P15259 253 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ACP1P24666 158 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 TSPAN7P41732 249 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 PSG4Q00888 419 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ZMYND11Q15326 602 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 FAM209AQ5JX71 171 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 OR1F12Q8NHA8 337 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 PECRQ9BY49 303 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 CHST5Q9GZS9 411 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 C5orf66Q9H5L9 145 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 CALHM2Q9HA72 323 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 TMEM38BQ9NVV0 291 aa9.03□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF716A6NP11 495 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MTRF1O75570 445 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 CSTBP04080 98 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 GSTP1P09211 210 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 GLI4P10075 376 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 THBS4P35443 961 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 FOXG1P55316 489 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MRPS34P82930 218 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MPPED2Q15777 294 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 CHRFAM7AQ494W8 412 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 BHLHE23Q8NDY6 225 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 PIGCQ92535 297 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 RBPMSQ93062 196 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 FAAP24Q9BTP7 215 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SLC6A15Q9H2J7 730 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SDHAF2Q9NX18 166 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 IL17BQ9UHF5 180 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MCTS1Q9ULC4 181 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 KALRNO60229 2985 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SERPINA7P05543 415 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 RSU1Q15404 277 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 ATP1A1-AS1Q5TC04 95 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 C11orf87Q6NUJ2 197 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SKA3Q8IX90 412 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 OR13G1Q8NGZ3 307 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SUN5Q8TC36 379 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 GSKIPQ9P0R6 139 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MAP1BP46821 2468 aaKnown RBP9.02□□□□□ -0.97
LIMA1-201ENST00000341247 IGKV1-27A0A075B6S5 117 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SYNGR3O43761 229 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SCGNO76038 276 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 HPP00738 406 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 PRF1P14222 555 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MAGEA5P43359 124 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 TSPO2Q5TGU0 170 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 VASH2Q86V25 355 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 HOGA1Q86XE5 327 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 MITD1Q8WV92 249 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 HAS2Q92819 552 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 LINC00052Q96N35 136 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 TAAR9Q96RI9 348 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 OR51B6Q9H340 312 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 SLC2A8Q9NY64 477 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 V9GYS6 101 aa9.02□□□□□ -0.97
LIMA1-201ENST00000341247 A0A0U1RQV5 110 aa9.01□□□□□ -0.97
LIMA1-201ENST00000341247 hCG_1807616A0A1W2PRN6 198 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms