RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 KCNE3Q9Y6H6 103 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 MYH4Q9Y623 1939 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 MAMSTRQ6ZN01 415 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 PARD6AQ9NPB6 346 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 TMEM129A0AVI4 362 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 DSCR4P56555 118 aaPredicted RBP11.34□□□□□ -0.59
SDC3-201ENST00000336798 ZNF788Q6ZQV5 615 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 TGIF2LYQ8IUE0 185 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 OR10D4PQ8NGN7 298 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 BCL2L2Q92843 193 aaPredicted RBP11.34□□□□□ -0.59
SDC3-201ENST00000336798 UBTD1Q9HAC8 227 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 PSG11Q9UQ72 335 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 VMA21Q3ZAQ7 101 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 BTNL3Q6UXE8 466 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 EXTL1Q92935 676 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 TAAR5O14804 337 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 TSPAN12O95859 305 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 CEACAM5P06731 702 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 ATF1P18846 271 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 CCR5P51681 352 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 DPTQ07507 201 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 MICBQ29980 383 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 C16orf47Q6ZP98 133 aaPredicted RBP11.34□□□□□ -0.59
SDC3-201ENST00000336798 A0A1W2PNV4 684 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 PTHLHP12272 177 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 FMODQ06828 376 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 XKR7Q5GH72 579 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 DGAT2L6Q6ZPD8 337 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 YTHDF2Q9Y5A9 579 aaKnown RBP11.33□□□□□ -0.6
SDC3-201ENST00000336798 RGPD2P0DJD1 1756 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 DNPH1O43598 174 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 APELAP0DMC3 54 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 GABRB1P18505 474 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 VWA1Q6PCB0 445 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 GABARAPL1Q9H0R8 117 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 B9D1Q9UPM9 204 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 IFITM5A6NNB3 132 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 ZNF260Q3ZCT1 412 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 ZNF680Q8NEM1 530 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 OR4C3Q8NH37 302 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 GPR87Q9BY21 358 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 ALG1L2C9J202 215 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 TCF21O43680 179 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 FUT6P51993 359 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 PAX5Q02548 391 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 OR2F1Q13607 317 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 HFEQ30201 348 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 LRP12Q9Y561 859 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 C4BP0C0L5 1744 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 CCDC187A0A096LP49 1063 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 PATE4P0C8F1 98 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 PNLIPRP2P54317 469 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 SPACA9Q96E40 222 aaPredicted RBP11.33□□□□□ -0.6
SDC3-201ENST00000336798 C2orf50Q96LR7 162 aa11.33□□□□□ -0.6
SDC3-201ENST00000336798 CIB3Q96Q77 187 aaPredicted RBP11.33□□□□□ -0.6
SDC3-201ENST00000336798 A0A087X0M5 115 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 A0A1B0GX30 115 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TMEM30CPA0ZSE6 113 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 CRYABP02511 175 aaKnown RBP11.32□□□□□ -0.6
SDC3-201ENST00000336798 ARRB2P32121 409 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TPPP2P59282 170 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 ISL1P61371 349 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 DHODHQ02127 395 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 GPNMBQ14956 572 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 CYB5R2Q6BCY4 276 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 PLPP6Q8IY26 295 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 OR1F12Q8NHA8 337 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 SMIM19Q96E16 107 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TMEM147Q9BVK8 224 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 NOVP48745 357 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 C3AR1Q16581 482 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 EDARADDQ8WWZ3 215 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 RHNO1Q9BSD3 238 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 OR1A1Q9P1Q5 309 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 POU3F3P20264 500 aaPredicted RBP11.32□□□□□ -0.6
SDC3-201ENST00000336798 SRSF5Q13243 272 aaKnown RBP11.32□□□□□ -0.6
SDC3-201ENST00000336798 RTP5Q14D33 572 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 ZNF628Q5EBL2 1059 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 FFAR4Q5NUL3 377 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 DYNC2LI1Q8TCX1 351 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TNFRSF12AQ9NP84 129 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 UFC1Q9Y3C8 167 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 SLC6A12P48065 614 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 LYG2Q86SG7 212 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 MRGPREQ86SM8 312 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 OR4C16Q8NGL9 310 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 PPP1R1CQ8WVI7 109 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 LSM2Q9Y333 95 aaKnown RBP11.32□□□□□ -0.6
SDC3-201ENST00000336798 A0A087WUJ7 227 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 ZNF716A6NP11 495 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 ZAR1LA6NP61 321 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 PPM1DO15297 605 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 NGFP01138 241 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 CD37P11049 281 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TNFRSF1AP19438 455 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 EPHA2P29317 976 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 CDK5R1Q15078 307 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TEX261Q6UWH6 196 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 TMEM18Q96B42 140 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 MYOZ1Q9NP98 299 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms