RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RAB1CQ92928 201 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 UBL7Q96S82 380 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ST6GALNAC5Q9BVH7 336 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 MFFQ9GZY8 342 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 MTFP1Q9UDX5 166 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 CYB5R1Q9UHQ9 305 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 AKR1C4P17516 323 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 HAAOP46952 286 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 KLF3P57682 345 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ATXN7L3Q14CW9 347 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 LINC01590Q5TEZ4 76 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SLC25A47Q6Q0C1 308 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 FBXW12Q6X9E4 464 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 CISD2Q8N5K1 135 aaKnown RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 REEP6Q96HR9 211 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 MLXQ9UH92 298 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ATP23Q9Y6H3 246 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 PTGFRP43088 359 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 S100A10P60903 97 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 RTP5Q14D33 572 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 TERB2Q8NHR7 220 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 APH1BQ8WW43 257 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 TMEM45BQ96B21 275 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 NKX3-1Q99801 234 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 HINT2Q9BX68 163 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SRRQ9GZT4 340 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 CDX4O14627 284 aaPredicted RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ALDOBP05062 364 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 FSTP19883 344 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 LGALS4P56470 323 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 CAV3P56539 151 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF85Q03923 595 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 MICBQ29980 383 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 FAM27D1Q5T7N8 215 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 NHLRC1Q6VVB1 395 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 LINC00114Q6XXX2 140 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SLC7A6Q92536 515 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 SGK3Q96BR1 496 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 GON7Q9BXV9 100 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 UNKLQ9H9P5 680 aaKnown RBP6.06□□□□□ -1.44
SF3B1-201ENST00000335508 GPR173Q9NS66 373 aa6.06□□□□□ -1.44
SF3B1-201ENST00000335508 DLL1O00548 723 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ZIC2O95409 532 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CRYBB2P43320 205 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ALDH3B1P43353 468 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CLDN6P56747 220 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FXYD4P59646 89 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 TNK1Q13470 666 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CDCP2Q5VXM1 449 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 C1orf162Q8NEQ5 155 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 PXT1Q8NFP0 134 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ZPLD1Q8TCW7 415 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 TRMT61AQ96FX7 289 aaKnown RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 OR2H1Q9GZK4 316 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ZNF552Q9H707 407 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 DECR2Q9NUI1 292 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FOXJ2Q9P0K8 574 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ALG5Q9Y673 324 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 MEIKINA0A087WXM9 373 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 IGHV3-15A0A0B4J1V0 119 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 OR5H1A6NKK0 313 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ST8SIA3O43173 380 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CYTIPO60759 359 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 S100A9P06702 114 aaKnown RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 PCMT1P22061 227 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 GLRA1P23415 457 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 EDDM3BP56851 147 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CD276Q5ZPR3 534 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CD163Q86VB7 1156 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 LYSMD2Q8IV50 215 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 WDSUB1Q8N9V3 476 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FDCSPQ8NFU4 85 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 S100PBPQ96BU1 408 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CITED4Q96RK1 184 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ESRP2Q9H6T0 727 aaKnown RBP6.05□□□□□ -1.44
SF3B1-201ENST00000335508 RNF122Q9H9V4 155 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 THADAQ6YHU6 1953 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 SNRPGP15A8MWD9 76 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ABCD4O14678 606 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 HPNP05981 417 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 ELK1P19419 428 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 MMP15P51511 669 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 CAV2P51636 162 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 KCNMB1Q16558 191 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM122BQ7Z309 247 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 SIAH3Q8IW03 269 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 DIRC2Q96SL1 478 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 OR51B6Q9H340 312 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 KCNIP2Q9NS61 270 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A10PA6NDY2 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A18PA6NE21 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A16PA6NEW6 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A20PA6NIJ5 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A8PA6NJQ4 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A7PA6NKC0 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A22PA8MWA6 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A12PA8MX19 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A5PA8MXJ8 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 FAM90A23PA8MXZ1 464 aa6.05□□□□□ -1.44
SF3B1-201ENST00000335508 EFSO43281 561 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms