RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 LHX9Q9NQ69 397 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 AQP7P3A6NL99 342 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 ATF1P18846 271 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 F2RP25116 425 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 RTL8BQ17RB0 113 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 PHYHD1Q5SRE7 291 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 MOB3BQ86TA1 216 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 GSX2Q9BZM3 304 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 SCN4AP35499 1836 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 CRYM-AS1A6NIL9 109 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 NCBP2LA6PVI3 153 aaKnown RBP9.1□□□□□ -0.95
CHD3-201ENST00000330494 TRIM77I1YAP6 450 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 DCTN6O00399 190 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 XRCC3O43542 346 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 HLA-HP01893 362 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 OR5G3P0C626 314 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 KIR2DL1P43626 348 aaPredicted RBP9.1□□□□□ -0.95
CHD3-201ENST00000330494 MFSD4AQ8N468 514 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 OR4C16Q8NGL9 310 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 OR5M8Q8NGP6 311 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 IGHV5-10-1A0A0J9YXX1 117 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 TMEM200CA6NKL6 621 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 CDC42EP2O14613 210 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 PHOX2AO14813 284 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 C1QCP02747 245 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 ZNF32P17041 273 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 OXA1LQ15070 435 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 SYS1Q8N2H4 156 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 GHRLQ9UBU3 117 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 SVILO95425 2214 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 OR4E1P0C645 316 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 PSMB3P49720 205 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 C1orf53Q5VUE5 145 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 CD276Q5ZPR3 534 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 TMEM123Q8N131 208 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 CCL17Q92583 94 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 TVP23CQ96ET8 276 aa9.1□□□□□ -0.95
CHD3-201ENST00000330494 ZNF629Q9UEG4 869 aaPredicted RBP9.1□□□□□ -0.95
CHD3-201ENST00000330494 ZNF239Q16600 458 aaKnown RBP9.09□□□□□ -0.95
CHD3-201ENST00000330494 SPINK9Q5DT21 86 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 CA5BP1Q8WTZ4 195 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 AK3Q9UIJ7 227 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 BTBD17A6NE02 478 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 C3orf80F5H4A9 247 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 OR5H8P0DN80 308 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 OR3A4PP47883 348 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 PRDX4Q13162 271 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 RELL2Q8NC24 303 aaPredicted RBP9.09□□□□□ -0.95
CHD3-201ENST00000330494 OR4D11Q8NGI4 311 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 HMGCLL1Q8TB92 370 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 NEU3Q9UQ49 428 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 FAM96BQ9Y3D0 163 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 NQO2P16083 231 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 C12orf73Q69YU5 71 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 BTLAQ7Z6A9 289 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 IL20Q9NYY1 176 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 AGFG2O95081 481 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 HBE1P02100 147 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 GABRB1P18505 474 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 MAGEA5P43359 124 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 CDK5Q00535 292 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 CLEC12BQ2HXU8 276 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 Q6ZRG5 221 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 KIAA1958Q8N8K9 716 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 CLRN3Q8NCR9 226 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 A0A1W2PRD5 423 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 A0A1W2PRF3 423 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 A0A1W2PRM7 423 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 ZNF724A8MTY0 619 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 PLPP3O14495 311 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 CRYABP02511 175 aaKnown RBP9.09□□□□□ -0.95
CHD3-201ENST00000330494 NAT2P11245 290 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 SUMO3P55854 103 aaPredicted RBP9.09□□□□□ -0.95
CHD3-201ENST00000330494 CD226Q15762 336 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 PABPC1L2AQ5JQF8 200 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 PRR7Q8TB68 274 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 NMES1Q9C002 83 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 IGHV3-43A0A0B4J1X8 118 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 TRAV17A0A0B4J275 112 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 IGHV3-43DP0DP04 118 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 THBS3P49746 956 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 EXOSC2Q13868 293 aaKnown RBP9.09□□□□□ -0.95
CHD3-201ENST00000330494 CDH26Q8IXH8 852 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 BPIFCQ8NFQ6 507 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 RFESDQ8TAC1 157 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 TMED6Q8WW62 240 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 OR8B4Q96RC9 309 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 FAAP24Q9BTP7 215 aa9.09□□□□□ -0.95
CHD3-201ENST00000330494 EPOPA6NHQ4 379 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ST8SIA3O43173 380 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 DTYMKP23919 212 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 RAB13P51153 203 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 TRA2AQ13595 282 aaKnown RBP eCLIP9.08□□□□□ -0.96
CHD3-201ENST00000330494 S100A7AQ86SG5 101 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 FBXL14Q8N1E6 418 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 OR13C8Q8NGS7 320 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ERGIC1Q969X5 290 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 GALMQ96C23 342 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 SPACA1Q9HBV2 294 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ARL2-SNX15V9GYD0 113 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms