RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 DHRS2Q13268 280 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 IL13RA2Q14627 380 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 FAM78BQ5VT40 261 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 TCTN3Q6NUS6 607 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 Q8IYB0 196 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 RBFOX3A6NFN3 312 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 FGF2P09038 288 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 HLA-DRB3P79483 266 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 ETV3LQ6ZN32 361 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 OR5A2Q8NGI9 324 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 A0A1W2PR48 441 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM30CPA0ZSE6 113 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 ATP6V1FQ16864 119 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.5□□□□□ -0.41
CSPG4-201ENST00000308508 KIR2DS2P43631 304 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 GNB2P62879 340 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 PPP2CAP67775 309 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 TIAL1Q01085 375 aaKnown RBP eCLIP12.5□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM207Q6UWW9 146 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 ADPRHL1Q8NDY3 354 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 WDFY2Q96P53 400 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 SPOCK3Q9BQ16 436 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 HSD17B13Q7Z5P4 300 aaPredicted RBP12.5□□□□□ -0.41
CSPG4-201ENST00000308508 ANKRD10Q9NXR5 420 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 GOSR1O95249 250 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 PRSS1P07477 247 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 OPRK1P41145 380 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 LSM11P83369 360 aaKnown RBP eCLIP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 GSG1Q2KHT4 349 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 OR5AU1Q8NGC0 362 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 SLC22A13Q9Y226 551 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 C9orf170A2RU37 121 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 SP1P08047 785 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 ATF1P18846 271 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 PXNP49023 591 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 GUCA2AQ02747 115 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 INPP5JQ15735 1006 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 VMA21Q3ZAQ7 101 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM116Q8NCL8 245 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 GPX7Q96SL4 187 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 NRSN2Q9GZP1 204 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 WASHC3Q9Y3C0 194 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 RP1L1Q8IWN7 2480 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 F5H697 171 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 ADAM20O43506 726 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 TAS1R1Q7RTX1 841 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 DUSP18Q8NEJ0 188 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 RGPD1P0DJD0 1748 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 CDRT15L2A8MXV6 281 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 MPC2O95563 127 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 SCAND1P57086 179 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 MIOXQ9UGB7 285 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF716A6NP11 495 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 INHBBP09529 407 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 VASH2Q86V25 355 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 MRGPRX4Q96LA9 322 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 FUT3P21217 361 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 CDC34P49427 236 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 SLC37A1P57057 533 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 OR1C1Q15619 314 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM52BQ4KMG9 183 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF343Q6P1L6 599 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 BPIFA4PQ86YQ2 179 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 WBP2Q969T9 261 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 FBXO4Q9UKT5 387 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 HS3ST3A1Q9Y663 406 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 ATP23Q9Y6H3 246 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 LTBP3Q9NS15 1303 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 MBPP02686 304 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 PRDX4Q13162 271 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 HLA-BQ31612 363 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 WDR74Q6RFH5 385 aaPredicted RBP12.49□□□□□ -0.41
CSPG4-201ENST00000308508 TMEM179BQ7Z7N9 219 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 ROBO4Q8WZ75 1007 aa12.49□□□□□ -0.41
CSPG4-201ENST00000308508 MYO5AQ9Y4I1 1855 aaKnown RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 CA3P07451 260 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ACAA1P09110 424 aaPredicted RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ERVS71-1P61550 626 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 RPS19BP1Q86WX3 136 aaKnown RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 STPG2Q8N412 459 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 MRPL43Q8N983 215 aaKnown RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 KNTC1P50748 2209 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SOCS7O14512 581 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 RBP4P02753 201 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 FGF9P31371 208 aaPredicted RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 MUC20Q8N307 709 aaPredicted RBP12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SNX22Q96L94 193 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 ICOSLGO75144 302 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 IGHA1P01876 353 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 IGHA2P01877 340 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SULT1A1P50225 295 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 MORN4Q8NDC4 146 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SIRT7Q9NRC8 400 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 CCSMST1Q4G0I0 132 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 FAM74A3Q4VXF1 159 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 OR10A7Q8NGE5 316 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 MARVELD1Q9BSK0 173 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 SH2D2AQ9NP31 389 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 LTB4R2Q9NPC1 389 aa12.48□□□□□ -0.41
CSPG4-201ENST00000308508 PLEKHB1Q9UF11 243 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms