RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PRSS45Q7RTY3 260 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 NDUFA11Q86Y39 141 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 TIGD4Q8IY51 512 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 RPL3LQ92901 407 aaKnown RBP12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 ITFG2Q969R8 447 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 HIST1H2AAQ96QV6 131 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 INTS14Q96SY0 518 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 RIIAD1A6NNX1 92 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 GYPBP06028 91 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 HSD17B1P14061 328 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF3P17036 446 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 GLRA1P23415 457 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 OPRL1P41146 370 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 GABRA2P47869 451 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 LGALS4P56470 323 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 CRMP1Q14194 572 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 NSUN5P1Q3KNT7 163 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 HCP5Q6MZN7 132 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 RNF148Q8N7C7 305 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 OR2T33Q8NG76 320 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 OR6N2Q8NGY6 317 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 OR5K1Q8NHB7 308 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 RORBQ92753 470 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 RNF170Q96K19 258 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 NSMCE2Q96MF7 247 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 ABHD6Q9BV23 337 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 TSSK6Q9BXA6 273 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 DNAJC27Q9NZQ0 273 aa12.01□□□□□ -0.49
CCDC88B-201ENST00000301897 DNAH3Q8TD57 4116 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF850A8MQ14 1090 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 H2BFMP0C1H6 154 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 FAHP16930 419 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 PRDX6P30041 224 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 DCTDP32321 178 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 OXLD1Q5BKU9 147 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 ERI1Q8IV48 349 aaKnown RBP12□□□□□ -0.49
CCDC88B-201ENST00000301897 ZDHHC23Q8IYP9 409 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 FAM185AQ8N0U4 392 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 Q8N2B8 174 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 TMEM185AQ8NFB2 350 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF671Q8TAW3 534 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 C17orf50Q8WW18 174 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 R3HDM4Q96D70 268 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 AJUBAQ96IF1 538 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 BTBD10Q9BSF8 475 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 MYLK2Q9H1R3 596 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 RASL12Q9NYN1 266 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 LYVE1Q9Y5Y7 322 aa12□□□□□ -0.49
CCDC88B-201ENST00000301897 IGKV1D-17A0A075B6S4 117 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 VGLL3A8MV65 326 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 TNFRSF11BO00300 401 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 PSG2P11465 335 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 GSTT1P30711 240 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 CAPZA1P52907 286 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 GNG3P63215 75 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNRF1Q8ND25 227 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 OR9Q2Q8NGE9 314 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 OR8D4Q8NGM9 314 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 PIGCQ92535 297 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 PHF21AQ96BD5 680 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 FOXRED1Q96CU9 486 aaPredicted RBP11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 SDSLQ96GA7 329 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 NKX3-1Q99801 234 aaPredicted RBP11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 PPP1R3EQ9H7J1 279 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 NIPAL2Q9H841 368 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 BRD7Q9NPI1 651 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 AURKAIP1Q9NWT8 199 aaPredicted RBP11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF319Q9P2F9 582 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 PITPNC1Q9UKF7 332 aa11.99□□□□□ -0.49
CCDC88B-201ENST00000301897 ARPC2O15144 300 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 CHST1O43916 411 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 PEX14O75381 377 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 CCNB2O95067 398 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ALDOBP05062 364 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ACKR3P25106 362 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 GPM6AP51674 278 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 BMXP51813 675 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ERVFRD-1P60508 538 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 RPL31P62899 125 aaKnown RBP11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 SMIM21Q3B7S5 101 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 LINC01590Q5TEZ4 76 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF770Q6IQ21 691 aaPredicted RBP11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 CALHM1Q8IU99 346 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 MKXQ8IYA7 352 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF454Q8N9F8 522 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 FAM81AQ8TBF8 368 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 HPSE2Q8WWQ2 592 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 MMP28Q9H239 520 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF702PQ9H963 129 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ELL3Q9HB65 397 aaPredicted RBP11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 CMC2Q9NRP2 79 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF222Q9UK12 451 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 COL7A1Q02388 2944 aa11.98□□□□□ -0.49
CCDC88B-201ENST00000301897 SLC1A7O00341 560 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 GASTP01350 101 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 TFF1P04155 84 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 CLUP10909 449 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 MSX2P35548 267 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms