RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 TMEM14DPA8MWL7 114 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 MT-ND4P03905 459 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 STOMP27105 288 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 PLP2Q04941 152 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 KISS1Q15726 138 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 HIKESHIQ53FT3 197 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 COLCA1Q6ZS62 124 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 OR2W3Q7Z3T1 314 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 C9orf106Q8NAJ2 232 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 FAM46BQ96A09 425 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 LHX6Q9UPM6 363 aa12.38□□□□□ -0.43
C9orf3-202ENST00000297979 C5orf49A4QMS7 147 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 H7C417 338 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 TOR1AO14656 332 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 PRSS3P35030 304 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 ZNF92Q03936 586 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 TNK1Q13470 666 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 DMRTC1Q5HYR2 192 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 ACBD4Q8NC06 268 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 SPSB4Q96A44 273 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 MTFP1Q9UDX5 166 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 CFAP47Q6ZTR5 3102 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 FRYQ5TBA9 3013 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 SCGNO76038 276 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 CRYABP02511 175 aaKnown RBP12.37□□□□□ -0.43
C9orf3-202ENST00000297979 UBBP0CG47 229 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 CCNOP22674 350 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 GIFP27352 417 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 FAM3AP98173 230 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 TATDN3Q17R31 274 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 MOGAT2Q3SYC2 334 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 OR2A2Q6IF42 318 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 C1orf147Q96MC9 270 aaPredicted RBP12.37□□□□□ -0.43
C9orf3-202ENST00000297979 TP63Q9H3D4 680 aaPredicted RBP12.37□□□□□ -0.43
C9orf3-202ENST00000297979 HRASLSQ9HDD0 168 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 GPR173Q9NS66 373 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 COPZ2Q9P299 210 aa12.37□□□□□ -0.43
C9orf3-202ENST00000297979 NAP1L6A6NFF2 107 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 INMT-MINDY4F8WBC2 141 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 GUCA2AQ02747 115 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 OR8B8Q15620 311 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 GSG1Q2KHT4 349 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 ZNF585AQ6P3V2 769 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 CNEP1R1Q8N9A8 125 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 PIGTQ969N2 578 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 SPSB1Q96BD6 273 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 CACNG6Q9BXT2 260 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 NUBP2Q9Y5Y2 271 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 URB1O60287 2271 aaKnown RBP12.36□□□□□ -0.43
C9orf3-202ENST00000297979 HMX3A6NHT5 357 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 SULT1C2O00338 296 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 PRSS12P56730 875 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 TGFBR3Q03167 851 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 PLEKHN1Q494U1 663 aaPredicted RBP12.36□□□□□ -0.43
C9orf3-202ENST00000297979 NSUN5P2Q63ZY6 315 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 OLFML2AQ68BL7 652 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 CRIP3Q6Q6R5 217 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 ZNF584Q8IVC4 421 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 OR6K3Q8NGY3 331 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 KCNG3Q8TAE7 436 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 POM121L2Q96KW2 1035 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 TAS2R8Q9NYW2 309 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 GHRLQ9UBU3 117 aa12.36□□□□□ -0.43
C9orf3-202ENST00000297979 RAB27BO00194 218 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 CNOT4O95628 575 aaKnown RBP12.35□□□□□ -0.43
C9orf3-202ENST00000297979 TCRBP04435 133 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 CCL2P13500 99 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 IGHV1-2P23083 117 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 PTGFRP43088 359 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 KIR2DL2P43627 348 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-202ENST00000297979 SSBP1Q04837 148 aaKnown RBP12.35□□□□□ -0.43
C9orf3-202ENST00000297979 CNN3Q15417 329 aaKnown RBP12.35□□□□□ -0.43
C9orf3-202ENST00000297979 PCGF3Q3KNV8 242 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 TMEM42Q69YG0 159 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 OR5D18Q8NGL1 313 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 GPX8Q8TED1 209 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 APOBEC3DQ96AK3 386 aaPredicted RBP12.35□□□□□ -0.43
C9orf3-202ENST00000297979 GPR137Q96N19 417 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 NUDT15Q9NV35 164 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 GAB2Q9UQC2 676 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 GMDSO60547 372 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 LPLP06858 475 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 CSF1P09603 554 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 ALDH3B1P43353 468 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 CCR6P51684 374 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 BTG1P62324 171 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 KRTCAP3Q53RY4 240 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 Q6ZT83 130 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 UBASH3BQ8TF42 649 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 DEDD2Q8WXF8 326 aa12.35□□□□□ -0.43
C9orf3-202ENST00000297979 CDC14BO60729 498 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 MPIG6BO95866 241 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 APLNRP35414 380 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 MDP1Q86V88 176 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TMEM104Q8NE00 496 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TNFAIP8L1Q8WVP5 186 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 CPNE2Q96FN4 548 aaPredicted RBP12.34□□□□□ -0.43
C9orf3-202ENST00000297979 ABHD17AQ96GS6 310 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 TMEM59Q9BXS4 323 aa12.34□□□□□ -0.43
C9orf3-202ENST00000297979 DMRT1Q9Y5R6 373 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms