RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TMEM14DPA8MWL7 114 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CDC14BO60729 498 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 SP9P0CG40 484 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 SERPINA2P20848 420 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 DEFA6Q01524 100 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 SRSF4Q08170 494 aaKnown RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 RBM39Q14498 530 aaKnown RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 SSX9Q7RTT3 188 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 ZNF283Q8N7M2 679 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR2AJ1Q8NGZ0 328 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 ZNF775Q96BV0 537 aaPredicted RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 KLHL13Q9P2N7 655 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 WDFY4Q6ZS81 3184 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 TRBV11-1A0A0K0K1C0 115 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 LIPT2A6NK58 231 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 F5H5K5 113 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 TIAF1O95411 115 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CD37P11049 281 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 GLB1P16278 677 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 ZNF17P17021 662 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 LAP3P28838 519 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR3A2P47893 321 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 SUPT4H1P63272 117 aaKnown RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 CSNK2A1P68400 391 aaPredicted RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 PRAMEF20Q5VT98 475 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 LCN10Q6JVE6 187 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 SVBPQ8N300 66 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 APCDD1LQ8NCL9 501 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CSNK2A3Q8NEV1 391 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR10G3Q8NGC4 313 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR51T1Q8NGJ9 327 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR13G1Q8NGZ3 307 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 MFSD8Q8NHS3 518 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 ASB13Q8WXK3 278 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 HDHD3Q9BSH5 251 aaPredicted RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 ZNF701Q9NV72 531 aaPredicted RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 URB1O60287 2271 aaKnown RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 A0A1B0GX78 115 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 MED19A0JLT2 244 aaPredicted RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 TXNL1O43396 289 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 PNLIPP16233 465 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 HIST1H1DP16402 221 aaKnown RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 SLC6A9P48067 706 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 CHAF1BQ13112 559 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 PCK2Q16822 640 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 HLA-BQ31612 363 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 TMEM128Q5BJH2 165 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 FAM76BQ5HYJ3 339 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 RPL7L1Q6DKI1 246 aaKnown RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 OR2A2Q6IF42 318 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 OR5H2Q8NGV7 314 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 PTX4Q96A99 478 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 DDIT4LQ96D03 193 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 PHYHIPLQ96FC7 376 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 C1orf147Q96MC9 270 aaPredicted RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 EHFQ9NZC4 300 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 GPR132Q9UNW8 380 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 FLVCR1Q9Y5Y0 555 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 IGKV1D-8A0A087WSZ0 117 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 IGKV1-9A0A0C4DH69 117 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 TEX13DA0A0J9YY54 714 aaPredicted RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 ANKUB1A6NFN9 424 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 LRP3O75074 770 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 HEXBP07686 556 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 HLA-GP17693 338 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 CX3CR1P49238 355 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 BPIFB3P59826 476 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 C17orf67Q0P5P2 114 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 EIF2S3LQ2VIR3 472 aaKnown RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 AVPI1Q5T686 147 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 UEVLDQ8IX04 471 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 LRRC18Q8N456 261 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 SAP25Q8TEE9 199 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 PIGTQ969N2 578 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 ARL11Q969Q4 196 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 LOXL4Q96JB6 756 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 CNTNAP3BQ96NU0 1288 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 RTBDNQ9BSG5 229 aaPredicted RBP8.85□□□□□ -0.99
LIG3-201ENST00000262327 PPP4R1LQ9P1A2 415 aa8.85□□□□□ -0.99
LIG3-201ENST00000262327 IGHV3-15A0A0B4J1V0 119 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 QDPRP09417 244 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 EIF2S3P41091 472 aaKnown RBP8.84□□□□□ -0.99
LIG3-201ENST00000262327 SNU13P55769 128 aaKnown RBP8.84□□□□□ -0.99
LIG3-201ENST00000262327 ACY1Q03154 408 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 MST1LQ2TV78 715 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 SLC23A3Q6PIS1 610 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 WDSUB1Q8N9V3 476 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 DMBX1Q8NFW5 382 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 RNF141Q8WVD5 230 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 ZNF581Q9P0T4 197 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 G3V3Y1 287 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 FGF16O43320 207 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 CER1O95813 267 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 SCGB1D2O95969 90 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 CFIP05156 583 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 FAM157CP0CG43 387 aa8.84□□□□□ -0.99
LIG3-201ENST00000262327 MUC1P15941 1255 aaPredicted RBP8.84□□□□□ -0.99
LIG3-201ENST00000262327 BLVRBP30043 206 aaPredicted RBP8.84□□□□□ -0.99
LIG3-201ENST00000262327 GABREP78334 506 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms