RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR1K1Q8NGR3 316 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 A0A1B0GTH9 108 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 ASCL1P50553 236 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 TAGLNQ01995 201 aaKnown RBP12.04□□□□□ -0.48
LDLR-201ENST00000252444 OR2AK2Q8NG84 335 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 SLC7A6Q92536 515 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 CMBLQ96DG6 245 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PIK3IP1Q96FE7 263 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 CCDC120Q96HB5 630 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 NRTNQ99748 197 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 TAS2R5Q9NYW4 299 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 RNF150Q9ULK6 438 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 NPTNQ9Y639 398 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 FPR2P25090 351 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PPT1P50897 306 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PLA2G2CQ5R387 149 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 CDCP2Q5VXM1 449 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 LYSMD2Q8IV50 215 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 SPNS2Q8IVW8 549 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 SLC35G3Q8N808 338 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 GALNT11Q8NCW6 608 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 OR2T35Q8NGX2 323 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PRRC2BQ5JSZ5 2229 aaKnown RBP12.04□□□□□ -0.48
LDLR-201ENST00000252444 A0A1W2PS29 197 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 SMCO3A2RU48 225 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 RER1O15258 196 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PRKNO60260 465 aaPredicted RBP12.04□□□□□ -0.48
LDLR-201ENST00000252444 PRRX1P54821 245 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PRR18Q8N4B5 295 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 SPICQ8N5J4 248 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 OR8B12Q8NGG6 310 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 TEX51A0A1B0GUA7 166 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 CCL21O00585 134 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 SOX15O60248 233 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 HIST1H1DP16402 221 aaKnown RBP12.04□□□□□ -0.48
LDLR-201ENST00000252444 FAHP16930 419 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 DTYMKP23919 212 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PCSK6P29122 969 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 TESK1Q15569 626 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 STEAP3Q658P3 488 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 FBXW12Q6X9E4 464 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 CCDC190Q86UF4 302 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 PLXNA2O75051 1894 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 TICRRQ7Z2Z1 1910 aa12.04□□□□□ -0.48
LDLR-201ENST00000252444 ACSM4P0C7M7 580 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 HOXA1P49639 335 aaPredicted RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 TATDN3Q17R31 274 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 XAF1Q6GPH4 301 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 IGF2-ASQ6U949 168 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 OR5D18Q8NGL1 313 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 FAM57AQ8TBR7 257 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 PKIBQ9C010 78 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 AUNIPQ9H7T9 357 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 RNF7Q9UBF6 113 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 CLEC2LP0C7M8 214 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 SNCAP37840 140 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 LINC00114Q6XXX2 140 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 MEX3BQ6ZN04 569 aaKnown RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 ZBTB8BQ8NAP8 495 aaPredicted RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 SECTM1Q8WVN6 248 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 ARL11Q969Q4 196 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 MYEF2Q9P2K5 600 aaKnown RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 LSM5Q9Y4Y9 91 aaKnown RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 PDE4DIPQ5VU43 2346 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 TUBAL3A6NHL2 446 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 CAMLGP49069 296 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 SELENOPP49908 381 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 HCCSP53701 268 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 GCNT2Q8N0V5 402 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 LILRB1Q8NHL6 650 aaPredicted RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 GLYATL2Q8WU03 294 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 NMNAT2Q9BZQ4 307 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 AKIP1Q9NQ31 210 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 MEIKINA0A087WXM9 373 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 FAM90A27PA6NNH2 459 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 ZFPL1O95159 310 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 RRASP10301 218 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 CLDN12P56749 244 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 CTF1Q16619 201 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 C16orf47Q6ZP98 133 aaPredicted RBP12.03□□□□□ -0.48
LDLR-201ENST00000252444 EXTL1Q92935 676 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 BTF3L4Q96K17 158 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 FKBP11Q9NYL4 201 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 ZNF224Q9NZL3 707 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 MYO7AQ13402 2215 aa12.03□□□□□ -0.48
LDLR-201ENST00000252444 GPR31O00270 319 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 HYAL3O43820 417 aaPredicted RBP12.02□□□□□ -0.48
LDLR-201ENST00000252444 IL18BPO95998 194 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 IFNA17P01571 189 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 BMI1P35226 326 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 CD79BP40259 229 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 MFFQ9GZY8 342 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 PLEKHA2Q9HB19 425 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 OR4C45A6NMZ5 311 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 UMODP07911 640 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 ZNF708P17019 499 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 CAV2P51636 162 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 BTNL3Q6UXE8 466 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 H2BFWTQ7Z2G1 175 aa12.02□□□□□ -0.48
LDLR-201ENST00000252444 OR2Z1Q8NG97 314 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms