RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ZNF879B4DU55 563 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 GABRPO00591 440 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 MTRF1O75570 445 aaKnown RBP8.39□□□□□ -1.07
CLN3-261ENST00000637686 GPX5O75715 221 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 NCR1O76036 304 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 ALX3O95076 343 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 IGHV1-46P01743 117 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 CD2P06729 351 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 ANXA2P07355 339 aaKnown RBP8.39□□□□□ -1.07
CLN3-261ENST00000637686 RAC2P15153 192 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 GADD45AP24522 165 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 COL8A2P25067 703 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 SLC6A9P48067 706 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 MMP15P51511 669 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 RPS25P62851 125 aaKnown RBP8.39□□□□□ -1.07
CLN3-261ENST00000637686 CCL8P80075 99 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 SLC3A1Q07837 685 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 OR2T2Q6IF00 324 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 FBXW12Q6X9E4 464 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 TMEM91Q6ZNR0 172 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 DOK3Q7L591 496 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 OR5AS1Q8N127 324 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 ZFP41Q8N8Y5 198 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 OR8B12Q8NGG6 310 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 KCTD7Q96MP8 289 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 PDCD1LG2Q9BQ51 273 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 MSL2Q9HCI7 577 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 N6AMT1Q9Y5N5 214 aa8.39□□□□□ -1.07
CLN3-261ENST00000637686 CHD3Q12873 2000 aaKnown RBP8.39□□□□□ -1.07
CLN3-261ENST00000637686 FLNAP21333 2647 aaKnown RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 ACANP16112 2415 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 TRBV5-7A0A0A0MS05 114 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 A0A1B0GVI7 797 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 LOC107986453A0A1B0GWG9 222 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 C5orf63A6NC05 138 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 VWC2LB2RUY7 222 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 H3BMQ9 156 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 NDUFS8O00217 210 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 TPD52L2O43399 206 aaKnown RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 SYT7O43581 403 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 UCHL1P09936 223 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 SLC2A1P11166 492 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 SLC25A16P16260 332 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 FSTP19883 344 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 KITLGP21583 273 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 ANOS1P23352 680 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 RANBP1P43487 201 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 MTNR1BP49286 362 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 FABP5Q01469 135 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 MALLQ13021 153 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 PCGF3Q3KNV8 242 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 SNAI3Q3KNW1 292 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 ACSM3Q53FZ2 586 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 ZMAT1Q5H9K5 638 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 FOXB2Q5VYV0 432 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 Q6ZR03 302 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 USP43Q70EL4 1123 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 Q71RC1 249 aaPredicted RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 FAM57BQ71RH2 274 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 BIVMQ86UB2 503 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 TPRA1Q86W33 373 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 PARP16Q8N5Y8 322 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 RGP1Q92546 391 aaPredicted RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 RDH5Q92781 318 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 YIPF5Q969M3 257 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 C12orf43Q96C57 262 aaKnown RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 PGAM5Q96HS1 289 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 DERL3Q96Q80 235 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 PIMREGQ9BSJ6 248 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 TMED9Q9BVK6 235 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 OR51E2Q9H255 320 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 CYSLTR2Q9NS75 346 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 ZNF275Q9NSD4 429 aaPredicted RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 DECR2Q9NUI1 292 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 TXNL4BQ9NX01 149 aaKnown RBP8.38□□□□□ -1.07
CLN3-261ENST00000637686 NKIRAS2Q9NYR9 191 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 FOXJ3Q9UPW0 622 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 V9GYS6 101 aa8.38□□□□□ -1.07
CLN3-261ENST00000637686 A0A096LNT2 108 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 A0A1B0GTI1 187 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 ANKRD61A6NGH8 418 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CDC14BO60729 498 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 DHRS3O75911 302 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 LY6G6DO95868 133 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 IL1AP01583 271 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 OCM2P0CE71 109 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 USF1P22415 310 aaPredicted RBP8.37□□□□□ -1.07
CLN3-261ENST00000637686 DDOSTP39656 456 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 NR4A2P43354 598 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 PRSS12P56730 875 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 MRPS11P82912 194 aaKnown RBP8.37□□□□□ -1.07
CLN3-261ENST00000637686 ZNF92Q03936 586 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 GK2Q14410 553 aaPredicted RBP8.37□□□□□ -1.07
CLN3-261ENST00000637686 OR8B8Q15620 311 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 SPRNQ5BIV9 151 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 FAM209AQ5JX71 171 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 GLYATL3Q5SZD4 288 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CLEC9AQ6UXN8 241 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 PGAP1Q75T13 922 aa8.37□□□□□ -1.07
CLN3-261ENST00000637686 CROCCP3Q8IVE0 287 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms