RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 C1orf174Q8IYL3 243 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 FTMTQ8N4E7 242 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 GALNT11Q8NCW6 608 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 LILRB4Q8NHJ6 448 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 RAB40AQ8WXH6 277 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 BCL2L14Q9BZR8 327 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 SRRQ9GZT4 340 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 NEK6Q9HC98 313 aa15.83■□□□□ 0.13
CLN3-254ENST00000637050 TMEM272A0A1B0GTI8 110 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 RAC2P15153 192 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 PLA2G7Q13093 441 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 C16orf87Q6PH81 154 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 ANGPTL5Q86XS5 388 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 SYNPRQ8TBG9 265 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 CMBLQ96DG6 245 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 MARS2Q96GW9 593 aaKnown RBP15.83■□□□□ 0.12
CLN3-254ENST00000637050 KCNK15Q9H427 330 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 RHBDL2Q9NX52 303 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 CRIM1Q9NZV1 1036 aa15.83■□□□□ 0.12
CLN3-254ENST00000637050 ZNF850A8MQ14 1090 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 BPNT1O95861 308 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 PPP3CBP16298 524 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 OR3A4PP47883 348 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 PLCXD3Q63HM9 321 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 OR2T2Q6IF00 324 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 ALKBH2Q6NS38 261 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 MOB3CQ70IA8 216 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 HAVCR1Q96D42 359 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 GPER1Q99527 375 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 CCDC32Q9BV29 185 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 PAPOLGQ9BWT3 736 aaKnown RBP15.82■□□□□ 0.12
CLN3-254ENST00000637050 MRPS28Q9Y2Q9 187 aaKnown RBP15.82■□□□□ 0.12
CLN3-254ENST00000637050 USP24Q9UPU5 2620 aa15.82■□□□□ 0.12
CLN3-254ENST00000637050 UPK1BO75841 260 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 CRYAAP02489 173 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 THBDP07204 575 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 ALDH3B1P43353 468 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 FUT6P51993 359 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 EFNB2P52799 333 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 QRFPP83859 136 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 IFITM3Q01628 133 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 PRDX4Q13162 271 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 IL18Q14116 193 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 AWAT2Q6E213 333 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 LHFPL2Q6ZUX7 228 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 GDPD1Q8N9F7 314 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 PNLDC1Q8NA58 520 aaKnown RBP15.81■□□□□ 0.12
CLN3-254ENST00000637050 KLF14Q8TD94 323 aaPredicted RBP15.81■□□□□ 0.12
CLN3-254ENST00000637050 PTX4Q96A99 478 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 CPNE2Q96FN4 548 aaPredicted RBP15.81■□□□□ 0.12
CLN3-254ENST00000637050 C1orf147Q96MC9 270 aaPredicted RBP15.81■□□□□ 0.12
CLN3-254ENST00000637050 FBLN5Q9UBX5 448 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 GPR160Q9UJ42 338 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 ERRFI1Q9UJM3 462 aaPredicted RBP15.81■□□□□ 0.12
CLN3-254ENST00000637050 SLC7A11Q9UPY5 501 aa15.81■□□□□ 0.12
CLN3-254ENST00000637050 IGKV1-27A0A075B6S5 117 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 LILRA1O75019 489 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 NAT2P11245 290 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 SELEP16581 610 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 PTGFRP43088 359 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 PITPNBP48739 271 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 RBP2P50120 134 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 PSG7Q13046 419 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 MADCAM1Q13477 382 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 SNX29P2Q8IUI4 249 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 BHLHE23Q8NDY6 225 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 RFT1Q96AA3 541 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 BORCS8Q96FH0 119 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 S100A16Q96FQ6 103 aaKnown RBP15.8■□□□□ 0.12
CLN3-254ENST00000637050 MYO7BQ6PIF6 2116 aa15.8■□□□□ 0.12
CLN3-254ENST00000637050 A0A0G2JMP0 313 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 A0A0X1KG70 313 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 FAM230AA0A1W2PPH8 454 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 FAM90A27PA6NNH2 459 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 ANKRD30BLA7E2S9 258 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 IQCF6A8MYZ5 107 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 VSIG8P0DPA2 414 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 RAB6AP20340 208 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 CD40P25942 277 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 MPV17P39210 176 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 NR4A2P43354 598 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 MTCP1P56278 107 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 ZP1P60852 638 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 TLE1Q04724 770 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 CEACAM21Q3KPI0 293 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 MTFR2Q6P444 385 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 GLIPR1L1Q6UWM5 242 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 BAIAP2L2Q6UXY1 529 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 ZDHHC23Q8IYP9 409 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 DTX3Q8N9I9 347 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 OR4M2Q8NGB6 313 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 PRR7Q8TB68 274 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 RNASE6Q93091 150 aaKnown RBP15.79■□□□□ 0.12
CLN3-254ENST00000637050 MRPL15Q9P015 296 aaKnown RBP15.79■□□□□ 0.12
CLN3-254ENST00000637050 MPC1Q9Y5U8 109 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 TMEM14DPA8MWL7 114 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 UBBP0CG47 229 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 GNLYP22749 145 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 UQCRFS1P47985 274 aa15.79■□□□□ 0.12
CLN3-254ENST00000637050 ZNF181Q2M3W8 571 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms