RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ENPP5Q9UJA9 477 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 WIPI2Q9Y4P8 454 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 LOC107986453A0A1B0GWG9 222 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 MAGEA13PA6NCF6 341 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 ANXA2P2A6NMY6 339 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 H3BSH0 61 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 IFNL4K9M1U5 179 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 WNT9BO14905 357 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 ISG15P05161 165 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 TGM4P49221 684 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 GTF2A1P52655 376 aaPredicted RBP13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 CHN2P52757 468 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 GBX2P52951 348 aaPredicted RBP13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF181Q2M3W8 571 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 AVPI1Q5T686 147 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 TMEM244Q5VVB8 128 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 WDR86Q86TI4 376 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 ZDHHC23Q8IYP9 409 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 OR52N1Q8NH53 320 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 Q8TCH9 128 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 HPSE2Q8WWQ2 592 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 RAB1CQ92928 201 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 TIMD4Q96H15 378 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 UFSP2Q9NUQ7 469 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 SCN3BQ9NY72 215 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 PCDHGB5Q9Y5G0 923 aa13.95□□□□□ -0.18
CCDC28A-202ENST00000611852 YLPM1P49750 1951 aaKnown RBP13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 LRP5LA4QPB2 252 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 PTGES3LE9PB15 166 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 TMEM178BH3BS89 294 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 GRPP07492 148 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 CCDC159P0C7I6 412 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 TMEM42Q69YG0 159 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 XAF1Q6GPH4 301 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 PEG10Q86TG7 708 aaKnown RBP13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 BIVMQ86UB2 503 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 LURAP1LQ8IV03 231 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF485Q8NCK3 441 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 CCDC54Q8NEL0 328 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 MICU1Q9BPX6 476 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 FGF23Q9GZV9 251 aaPredicted RBP13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 FN3KRPQ9HA64 309 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 PAK1IP1Q9NWT1 392 aaPredicted RBP13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 BABAM2Q9NXR7 383 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 NPTNQ9Y639 398 aa13.94□□□□□ -0.18
CCDC28A-202ENST00000611852 ABCA1O95477 2261 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 A6NIN4 97 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 LMX1BO60663 402 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 ZFPL1O95159 310 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 CYB5R3P00387 301 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 NRASP01111 189 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 CDK1P06493 297 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 THBS2P35442 1172 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 SLC35A2P78381 396 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF154Q13106 437 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 TMEM249Q2WGJ8 235 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 CEACAM21Q3KPI0 293 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 CCDC58Q4VC31 144 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 FAM76BQ5HYJ3 339 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 DMRTC1Q5HYR2 192 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 CEP78Q5JTW2 689 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF676Q8N7Q3 588 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 OR1M1Q8NGA1 313 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 GATAD2BQ8WXI9 593 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 SGCDQ92629 289 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 MYDGFQ969H8 173 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 HIST1H2AAQ96QV6 131 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 RTL8AQ9BWD3 113 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 NARFLQ9H6Q4 476 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 PLEKHA1Q9HB21 404 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 UBAP1Q9NZ09 502 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 TPRKBQ9Y3C4 175 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 TLN2Q9Y4G6 2542 aa13.93□□□□□ -0.18
CCDC28A-202ENST00000611852 TRBV2A0A0J9YWF9 115 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 LRRC30A6NM36 301 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 TMEM212A6NML5 194 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 TNFAIP8O95379 198 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 LALBAP00709 142 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 IGHV2-70P01814 119 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF12P17014 697 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 IL2RGP31785 369 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 CDH15P55291 814 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 KRTAP1-1Q07627 177 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 CLVS2Q5SYC1 327 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 RNLSQ5VYX0 342 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 RPL22L1Q6P5R6 122 aaKnown RBP13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 ZNF826PQ6ZT77 177 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 C11orf53Q8IXP5 236 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 OR11L1Q8NGX0 322 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 OR10AC1Q8NH08 325 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 CLDND2Q8NHS1 167 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 HPS1Q92902 700 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 RNF170Q96K19 258 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 PDCD1LG2Q9BQ51 273 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 TLNRD1Q9H1K6 362 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 GSX1Q9H4S2 264 aaPredicted RBP13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 DUSP21Q9H596 190 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 C1orf123Q9NWV4 160 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 SCOCQ9UIL1 159 aa13.92□□□□□ -0.18
CCDC28A-202ENST00000611852 HHLA2Q9UM44 414 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms