RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TSSC4Q9Y5U2 329 aaPredicted RBP8.17□□□□□ -1.1
TRIM28-210ENST00000597618 hCG_1809904A0A1W2PP81 198 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 A0A1W2PPE2 198 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 A0A1W2PR64 198 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 A0A1W2PRQ8 180 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 A0A1W2PRV1 198 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TCRBV4S1A1TA0A5B7 111 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TMEM210A6NLX4 147 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 ANXA2P2A6NMY6 339 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 OR2AT4A6NND4 320 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 ARPC3O15145 178 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 SYNGR1O43759 233 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 ZNF682O95780 498 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TFF1P04155 84 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 SLC2A1P11166 492 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 HIST1H1CP16403 213 aaKnown RBP8.16□□□□□ -1.1
TRIM28-210ENST00000597618 COX7A1P24310 79 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 NOS3P29474 1203 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 SLC6A6P31641 620 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 PRKXP51817 358 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 FAM3AP98173 230 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 DGCR6Q14129 220 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 DOC2BQ14184 412 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TAF13Q15543 124 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 SNCBQ16143 134 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TIGD6Q17RP2 521 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TMEM95Q3KNT9 176 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 PLA1AQ53H76 456 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 FGD3Q5JSP0 725 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 CCDC121Q6ZUS5 278 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 SLC16A9Q7RTY1 509 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 ZDHHC21Q8IVQ6 265 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 TMEM185AQ8NFB2 350 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 OR4K13Q8NH42 304 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 KCNJ15Q99712 375 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 RTL8AQ9BWD3 113 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 PAPOLGQ9BWT3 736 aaKnown RBP8.16□□□□□ -1.1
TRIM28-210ENST00000597618 NLKQ9UBE8 527 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.16□□□□□ -1.1
TRIM28-210ENST00000597618 PCDHGB5Q9Y5G0 923 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 N6AMT1Q9Y5N5 214 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 V9GYY5 206 aaPredicted RBP8.16□□□□□ -1.1
TRIM28-210ENST00000597618 DNAH7Q8WXX0 4024 aa8.16□□□□□ -1.1
TRIM28-210ENST00000597618 OR6C68A6NDL8 312 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 FAM90A8PA6NJQ4 464 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 BBIP1A8MTZ0 92 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 MRASO14807 208 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 TBX1O43435 398 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 AKR7A2O43488 359 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 H1F0P07305 194 aaKnown RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 CFL1P23528 166 aaKnown RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 LMO1P25800 156 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 RPS27P42677 84 aaKnown RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 GABRA2P47869 451 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 RAB13P51153 203 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 AGBL2Q5U5Z8 902 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 FKBP9P1Q75LS8 142 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 LHFPL4Q7Z7J7 247 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 ZNRF1Q8ND25 227 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 CSNK2A3Q8NEV1 391 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 SDR9C7Q8NEX9 313 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 RPL3LQ92901 407 aaKnown RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 REEP6Q96HR9 211 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 IFT27Q9BW83 186 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 CHID1Q9BWS9 393 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 FN3KQ9H479 309 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 ABCB9Q9NP78 766 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 C19orf12Q9NSK7 152 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 USE1Q9NZ43 259 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 ZMAT5Q9UDW3 170 aaKnown RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 TBL2Q9Y4P3 447 aaKnown RBP8.15□□□□□ -1.1
TRIM28-210ENST00000597618 ENPP4Q9Y6X5 453 aa8.15□□□□□ -1.1
TRIM28-210ENST00000597618 HUWE1Q7Z6Z7 4374 aaKnown RBP8.14□□□□□ -1.11
TRIM28-210ENST00000597618 IGKV1D-17A0A075B6S4 117 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 hCG_38984A0A1B0GV85 526 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 ZNF878C9JN71 531 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 IDH3BO43837 385 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 ANXA2P07355 339 aaKnown RBP8.14□□□□□ -1.11
TRIM28-210ENST00000597618 GLRA1P23415 457 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 GSK3AP49840 483 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 DYNLT3P51808 116 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 CAPZA1P52907 286 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 SLC25A1P53007 311 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 ERVFRD-1P60508 538 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 RPL31P62899 125 aaKnown RBP8.14□□□□□ -1.11
TRIM28-210ENST00000597618 BLCAPP62952 87 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 TCTEX1D4Q5JR98 221 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 KHDC1LQ5JSQ8 128 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 METTL21CQ5VZV1 264 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 Q6ZS46 218 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 CBLL1Q75N03 491 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 DCXRQ7Z4W1 244 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 CENPVQ7Z7K6 275 aaPredicted RBP8.14□□□□□ -1.11
TRIM28-210ENST00000597618 DYNAPQ8N1N2 210 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 LINC00482Q8N8I6 264 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 PROKR2Q8NFJ6 384 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 OR4X2Q8NGF9 303 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 MYDGFQ969H8 173 aa8.14□□□□□ -1.11
TRIM28-210ENST00000597618 SLAMF6Q96DU3 332 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms