RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SIGLEC5O15389 551 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 FADS1O60427 444 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 DOK2O60496 412 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 FBXO24O75426 580 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 GLCEO94923 617 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 NDUFB2O95178 105 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 NTN1O95631 604 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 IFNA10P01566 189 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 IGHV2-5P01817 119 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 HLA-AP01891 365 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 MT-ND4LP03901 98 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 CRHP06850 196 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 TACSTD2P09758 323 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 RBMY1DP0C7P1 496 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 PET100P0DJ07 73 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 HKR1P10072 659 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 LYL1P12980 280 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 MAOAP21397 527 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 HIST1H1TP22492 207 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 TEAD1P28347 426 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 TACR3P29371 465 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 MPIP34949 423 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 KCNJ3P48549 501 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 CX3CR1P49238 355 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 DIO1P49895 249 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 RAB5CP51148 216 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 PRKAG1P54619 331 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 TAS2R31P59538 309 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 CD81P60033 236 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 RAB4BP61018 213 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 STXBP1P61764 594 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 OC90Q02509 493 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 DHRS2Q13268 280 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ALKBH1Q13686 389 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 SMCO1Q147U7 214 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 RHEBQ15382 184 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR1Q1Q15612 314 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZIC1Q15915 447 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 DEFB110Q30KQ9 67 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 NKAIN1Q4KMZ8 207 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZNF684Q5T5D7 378 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 MRPL2Q5T653 305 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 ATPAF1Q5TC12 328 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 TMEM244Q5VVB8 128 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 SPINK14Q6IE38 97 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 EIF5AL1Q6IS14 154 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 ARMC6Q6NXE6 501 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 FAM180BQ6P0A1 224 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 STAC2Q6ZMT1 411 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZNF793Q6ZN11 406 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 BEND4Q6ZU67 534 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OLIG3Q7RTU3 272 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 SLC16A13Q7RTY0 426 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 SLC16A9Q7RTY1 509 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 UBE3DQ7Z6J8 389 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 LYG2Q86SG7 212 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ADGRE4PQ86SQ3 457 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 BAP18Q8IXM2 172 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZNF595Q8IYB9 648 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 PRSS58Q8IYP2 241 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 LRRC25Q8N386 305 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 GTPBP8Q8N3Z3 284 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZNF561Q8N587 486 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 COMMD1Q8N668 190 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZNF433Q8N7K0 673 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 TMEM178AQ8NBL3 297 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR2L5Q8NG80 312 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR4K17Q8NGC6 315 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR51S1Q8NGJ8 323 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR4A4PQ8NGN8 299 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR9A2Q8NGT5 310 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 OR5K2Q8NHB8 316 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ADAMTS15Q8TE58 950 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 C2CD4CQ8TF44 421 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 MITD1Q8WV92 249 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZFPM2Q8WW38 1151 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 HIST1H2BAQ96A08 127 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 SLC25A28Q96A46 364 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 FOXRED1Q96CU9 486 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 CNRIP1Q96F85 164 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 SMIM8Q96KF7 97 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 PRAP1Q96NZ9 151 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 AQP10Q96PS8 301 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 STACQ99469 402 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 PHB2Q99623 299 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 PRRT1Q99946 306 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ZNF747Q9BV97 191 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 PAPOLGQ9BWT3 736 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 NMNAT2Q9BZQ4 307 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 NMES1Q9C002 83 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 RAB33BQ9H082 229 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 COMMD4Q9H0A8 199 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 WDR13Q9H1Z4 485 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 TMPRSS5Q9H3S3 457 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 MTHFD2LQ9H903 347 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 TREM1Q9NP99 234 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 ACKR4Q9NPB9 350 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 MEPEQ9NQ76 525 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 NIT2Q9NQR4 276 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms